Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1017
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1286 - 29000688-29001526,29001982-29002075,29002480-290025... 31 0.53
02_05_0265 + 27267361-27268494 31 0.93
09_02_0036 + 3217163-3217584,3217752-3218322 30 1.2
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717... 29 2.1
02_03_0350 + 18027932-18028125,18028185-18028270,18028889-18028980 29 2.1
11_01_0495 - 3807867-3807882,3808463-3808641 29 2.8
01_06_1102 - 34541341-34541561,34541691-34541769,34541880-345419... 29 2.8
11_01_0349 - 2614682-2614721,2614881-2614955,2615346-2615538,261... 29 3.7
03_02_0874 + 12017069-12018051,12018137-12018316,12018421-120186... 28 5.0
10_07_0105 + 12922828-12923448,12923554-12923907,12924008-129243... 28 6.5
02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195... 28 6.5
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 27 8.7
>06_03_1286 -
29000688-29001526,29001982-29002075,29002480-29002581,
29002638-29002710,29003747-29003804,29003859-29003904,
29003985-29004111,29004198-29004273,29004348-29004405,
29004490-29004588,29004679-29004807,29005333-29005454,
29005567-29005735,29005829-29005929,29006082-29006208,
29006284-29006373,29006516-29006602,29006703-29006963,
29007029-29007058
Length = 895
Score = 31.5 bits (68), Expect = 0.53
Identities = 26/70 (37%), Positives = 37/70 (52%)
Frame = -3
Query: 241 LTRGPTTSIKYIYRMGVNLSSEME*KIVNNILSTSSYYFHSKFHQKNRIICISVK*Y*TD 62
+TRGPT + ++IY VN SE+E K+ N +L S N+I+ I V Y
Sbjct: 452 MTRGPTANSQWIYDSPVN--SEVESKLRNLLLELGS----------NKILGIQVCAYKDG 499
Query: 61 RVIIILIAIF 32
+VII A+F
Sbjct: 500 KVIIDTAAVF 509
>02_05_0265 + 27267361-27268494
Length = 377
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 272 FLP*SSNVFRFEGWGSRCNYTRGGARYPIRPIVSRITIHWPSFYNVVTGKTLALP 436
+ P S + G+G R GGA +V+ + + + YN +TG+ LALP
Sbjct: 88 YSPSSGRTYGVRGYGGRSWLVMGGACQ--EHLVTTVDLSTTALYNPLTGERLALP 140
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 377 ITIHWPSFYNVV-TGKTLALPNLIALQH 457
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>03_05_0062 +
20370608-20370977,20371062-20371541,20371661-20371731,
20371836-20371912,20372076-20372223,20372346-20372507,
20372743-20372940
Length = 501
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 349 PGPPSSIVTTAAPPFKP 299
P PP++++TT APP +P
Sbjct: 8 PSPPTTLITTQAPPIQP 24
>02_03_0350 + 18027932-18028125,18028185-18028270,18028889-18028980
Length = 123
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 475 WRNSRRGPHRSPSQQLRSLNGEW 543
WR+SRRG H S S S +G W
Sbjct: 44 WRDSRRGAHASSSGGASSESGRW 66
>11_01_0495 - 3807867-3807882,3808463-3808641
Length = 64
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 486 PKRPAPIAFPTVAQPEWRMANCKP 557
P++ P+AFP +P WRM C P
Sbjct: 42 PEQQLPVAFP-YRRPRWRMRKCFP 64
>01_06_1102 -
34541341-34541561,34541691-34541769,34541880-34541929,
34542291-34542576
Length = 211
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 511 SQQLRSLNGEWQIVSR*YFVKIRVKFFVKSA 603
SQ R L+G W VSR + V R +F+ A
Sbjct: 56 SQARRELHGVWSYVSRPFIVAARARFYFHKA 86
>11_01_0349 -
2614682-2614721,2614881-2614955,2615346-2615538,
2615654-2616287
Length = 313
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +2
Query: 257 PPPCLFL-P*SSNVFRFEGWGSRCNYTRGGARYPIRP 364
PPP + + P + N + W C T GG YP P
Sbjct: 155 PPPAVRVAPAAQNAGEQQPWSPMCYSTSGGGSYPTSP 191
>03_02_0874 +
12017069-12018051,12018137-12018316,12018421-12018600,
12018718-12018797,12018999-12019259,12019360-12019474,
12019631-12019855,12020840-12020849
Length = 677
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 451 AAHPPFA-SWRNSRRGPHRSPSQQLRSLNGEW 543
AAH PF S +NS RGP SPS S W
Sbjct: 79 AAHSPFLLSRQNSGRGPAPSPSPLSASSPSSW 110
>10_07_0105 +
12922828-12923448,12923554-12923907,12924008-12924330,
12928324-12928401,12928760-12928883
Length = 499
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 315 PHPSNRNTLLLHGRNKQGGGTTRADSQEVLPPV 217
P P++ TL +H K G G A++ + P+
Sbjct: 76 PAPASDKTLAVHAGEKLGSGAAAAETDSIATPI 108
>02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,
1957954-1958041,1958143-1958324,1958508-1958644,
1958790-1958856,1959132-1959246,1959390-1959501,
1960420-1960495,1960576-1960758,1961166-1961326,
1961463-1961532,1962721-1962928,1963015-1963304,
1963388-1963509,1963605-1963749,1964040-1964113,
1964464-1964911
Length = 1274
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 275 EISRVVVPPAQTHKRSYHQYKI-YISYGRKPELRNGIKDSQ 156
++++ + P TH+ S+H+ I Y++ G PE ++ +Q
Sbjct: 1153 DLNKFITPALPTHRLSFHRALILYVAAGALPEALETLRKNQ 1193
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 389 WPSFYNVV-TGKTLALPNLIALQH 457
W F N+V +G TL+LP + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,748,591
Number of Sequences: 37544
Number of extensions: 424271
Number of successful extensions: 1197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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