Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1017
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14635-8|AAK84492.1|  307|Caenorhabditis elegans Collagen protei...    29   1.9  
L15418-1|AAA17445.1|  307|Caenorhabditis elegans col-36 collagen...    29   1.9  
Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U14635-8|AAK84492.1|  307|Caenorhabditis elegans Collagen protein
           36 protein.
          Length = 307

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 385 NCNTTHYRANWVPGPPSSIVTTAAPPFKP 299
           N N  H+ A  VPG   SI+++A PP +P
Sbjct: 132 NGNDGHHGAPGVPGKEGSILSSALPPSEP 160


>L15418-1|AAA17445.1|  307|Caenorhabditis elegans col-36 collagen
           protein.
          Length = 307

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 385 NCNTTHYRANWVPGPPSSIVTTAAPPFKP 299
           N N  H+ A  VPG   SI+++A PP +P
Sbjct: 132 NGNDGHHGAPGVPGKEGSILSSALPPSEP 160


>Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical
           protein T25G3.3 protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 50  YYNSVRLVSFDANTNNPIFLMEFGMEIV*TCRKNII 157
           Y+ +  LVS D   N   +   F +EIV  CR NI+
Sbjct: 218 YHYAQELVSHDTKNNTYDYKHTFCVEIVPICRDNIV 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,638,089
Number of Sequences: 27780
Number of extensions: 341890
Number of successful extensions: 834
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)