Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1017
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20760.1 68418.m02467 hypothetical protein                          28   4.1  
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ...    28   4.1  
At2g17600.1 68415.m02036 DC1 domain-containing protein contains ...    28   5.5  
At1g27020.1 68414.m03294 expressed protein                             27   7.2  
At1g54030.1 68414.m06156 GDSL-motif lipase, putative similar to ...    27   9.6  

>At5g20760.1 68418.m02467 hypothetical protein
          Length = 220

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 5   NFLYYCYVLEDSN*YYYNSVRLVSFDANTNNPIFLM 112
           NF   C   E++   YY ++RL+  + N    +FL+
Sbjct: 69  NFFVRCLEFENATAMYYEAIRLIVREENVMGSLFLL 104


>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
           almost identical to ubiquitin-specific protease 15
           GI:11993475 [Arabidopsis thaliana], 7 amino acid
           difference
          Length = 924

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 251 PAQTHKRSYHQYKIYISYGRKPELRNGIKDSQ*YSF 144
           PA      Y+   +Y++Y   PE  NG    + YS+
Sbjct: 888 PAPYPPHDYYDQSMYVNYETNPEFNNGQDQDRTYSY 923


>At2g17600.1 68415.m02036 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 580

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 263 VVVPPAQTHKRSYHQYKIYISYGRKPELR-NGIKDS 159
           ++VP   THK   H   I  SY RK  +  +G KDS
Sbjct: 394 ILVPDCFTHKSHEHPLFISTSYSRKGNISCDGCKDS 429


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 415 WENPGVTQLNRLAAHPPFASW 477
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


>At1g54030.1 68414.m06156 GDSL-motif lipase, putative similar to
           myrosinase-associated proteins GI:1769968, GI:1769970,
           GI:1216391, GI:1216389 from [Brassica napus]; contains
           Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase
          Length = 417

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +2

Query: 74  SFDANTNNP----IFLMEFGMEIV*TCRKNIIDYLLFHF*AQVYAHTIYIFYTG 223
           SF AN+N P    + L +  M I+ +    +   LL HF    +A T+++F  G
Sbjct: 6   SFTANSNEPPPSKLSLSDLSMAILKSHFFLLFPLLLLHFHTVSFAQTLFVFGDG 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,789,215
Number of Sequences: 28952
Number of extensions: 317115
Number of successful extensions: 747
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)