Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1016
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   3.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   4.1  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    26   5.5  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 18   PDRAAPCPFKCLCNTCWSSCDAITQHDFANNQLRNVSQLYEG 143
            PD+       CL N C +   A+TQH+  N +L  +  +  G
Sbjct: 1393 PDKINSLCSDCLKNPCATISKAVTQHNAYNKKLSLLFDICRG 1434


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 415 ILCSPSPCPLCT 380
           +LC P PCP CT
Sbjct: 296 LLCHPGPCPPCT 307


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 385 REDMEKVNIKFHDNDTLTYQHNKILRFVPEMSVDKKLK 498
           +E  EK N      D +T  HNK    + ++  DK+ K
Sbjct: 560 KEKPEKKNNSTKQKDLITVSHNKGTTAIEDLDEDKRSK 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,642
Number of Sequences: 5004
Number of extensions: 47489
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)