Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1016
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67955-3|AAO91745.1|  655|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U67955-2|AAB07583.2|  791|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U67955-3|AAO91745.1|  655|Caenorhabditis elegans Hypothetical
           protein C16H3.3b protein.
          Length = 655

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 387 RGHGEGEHKIPRQRHADLPAQQNFEIRPGDERRQEAKTG--GANIPL 521
           RGH   E +I  ++HA+  +    EI+  +E+ +  K G    NIPL
Sbjct: 239 RGHISEEQEINYEKHAEASSSDGMEIQVFEEKSRNEKEGISTENIPL 285


>U67955-2|AAB07583.2|  791|Caenorhabditis elegans Hypothetical
           protein C16H3.3a protein.
          Length = 791

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 387 RGHGEGEHKIPRQRHADLPAQQNFEIRPGDERRQEAKTG--GANIPL 521
           RGH   E +I  ++HA+  +    EI+  +E+ +  K G    NIPL
Sbjct: 375 RGHISEEQEINYEKHAEASSSDGMEIQVFEEKSRNEKEGISTENIPL 421


>AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical
           protein M57.2 protein.
          Length = 580

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 368 IRDHINIYQNIE*LPSSL*PKRQYCYKSVASQK 270
           I+ +  I +N+E L  +L PKR   YKS+ S++
Sbjct: 407 IKSYEEIIKNLENLSENLDPKRSELYKSLISRQ 439


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,726,985
Number of Sequences: 27780
Number of extensions: 266275
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)