Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1016
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11350.1 68418.m01325 endonuclease/exonuclease/phosphatase fa...    29   2.0  
At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa...    29   2.7  
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa...    29   2.7  
At3g14710.1 68416.m01860 F-box family protein   ; similar to SKP...    28   6.2  

>At5g11350.1 68418.m01325 endonuclease/exonuclease/phosphatase
           family protein contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 754

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 360 ISNCNYRVQRGHGEGEHKIPRQRHADLPAQQNFEIRP 470
           + + N+R + G    +H+ P  +    P  QN+E RP
Sbjct: 74  VHDANFRFRHGEPYRQHQPPLDQRQQPPFNQNYEFRP 110


>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
           profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
           PF00628 PHD-finger
          Length = 885

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 468 PGDERRQEAKTGGANIPLLVSRRDPSSTL*VQRPAWSQMKTGQRMQGSIKSSTATDFWCL 647
           PG   R EA  G  + PL   R DPS  + +     +  ++G + Q  + +   ++ W  
Sbjct: 729 PGSTGRSEANDGLVDNPLAFGRDDPSLQIFLPTKPDASAQSGFKNQADMSNGLRSEDWIS 788

Query: 648 L 650
           L
Sbjct: 789 L 789


>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
           profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
           PF00628 PHD-finger
          Length = 873

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 468 PGDERRQEAKTGGANIPLLVSRRDPSSTL*VQRPAWSQMKTGQRMQGSIKSSTATDFWCL 647
           PG   R EA  G  + PL   R DPS  + +     +  ++G + Q  + +   ++ W  
Sbjct: 729 PGSTGRSEANDGLVDNPLAFGRDDPSLQIFLPTKPDASAQSGFKNQADMSNGLRSEDWIS 788

Query: 648 L 650
           L
Sbjct: 789 L 789


>At3g14710.1 68416.m01860 F-box family protein   ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 442

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -1

Query: 175 ISRVQITQTFIPSYNCDTFLS*LLAKSCCVIASHEDQHVLHKHL 44
           +SR +  +TF+ S+ C T L+ +L+K   V+A  +   +++ HL
Sbjct: 281 LSRSEWPKTFLRSFTCVTSLALVLSKDFHVMAVPKFSQLVYLHL 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,841,656
Number of Sequences: 28952
Number of extensions: 244470
Number of successful extensions: 496
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)