Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1015
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    28   1.2  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    26   6.3  
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    25   8.4  

>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 108 SVTLYFYYGTMWYYRSLF*HFILFFLQNKKL 16
           +V  +FY  TM++Y +   H++ FF+  ++L
Sbjct: 639 TVRNHFYRSTMFFYMTYVFHYLPFFIMGRQL 669


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = -2

Query: 289 ICCSNLKNNSLAIHCLNVMN*IKNLLFFN*KP*IYFLAKLKGRCFF 152
           +CC N   N        + +  +  L F   P  + L K   RCFF
Sbjct: 237 VCCLNTMGNLNICKTTEIFSKNREQLIFMGTPKFHLLPKDSNRCFF 282


>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -1

Query: 251 SLP*CDELNKKSVVFQLKTMNIFSSQIKRQMFFFSNK*INVFHQSQVAVSPYIFIMEL 78
           SL   D+L   S  F +KT++ F           SN    + HQ+Q A +  +F  EL
Sbjct: 43  SLDIVDQLQWTSNAFYMKTIDQFHEMYISAYVTPSNMRFMLLHQNQSADNIKLFFQEL 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,840
Number of Sequences: 5004
Number of extensions: 60891
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)