Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1015
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.0  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
          protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 65 DHYSNILFFFFCKIKN 18
          +HY +IL F+F K KN
Sbjct: 6  EHYRHILLFYFRKGKN 21


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 142 LLLKKNICLLIWLENIFMVF 201
           ++LKK +C +I +  +F+ F
Sbjct: 221 IILKKTVCFVIPIMLLFLAF 240


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 88  LWNYVVLPITILTFYS 41
           +W YV+  I I+ FYS
Sbjct: 226 IWAYVIPLIFIILFYS 241


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 88  LWNYVVLPITILTFYS 41
           +W YV+  I I+ FYS
Sbjct: 226 IWAYVIPLIFIILFYS 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,548
Number of Sequences: 438
Number of extensions: 4082
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)