Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1014
         (613 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   3.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.2  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   6.2  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   6.2  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   6.2  

>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -3

Query: 323 LAISYPQLPKH-HRQPVP 273
           ++I+YPQ P+H +  P P
Sbjct: 1   MSITYPQYPQHPYAAPAP 18


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 160 PRSKPLISPKRRPIKLSQSMTKT 228
           P S+PL+SPK    +     T T
Sbjct: 109 PNSEPLVSPKSEKEEKDMETTLT 131


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = +2

Query: 464 SPAIKSIATQPPVEESRPSR 523
           SPA++++ T+P  +++ P++
Sbjct: 123 SPALRALLTRPQAKKTPPNQ 142


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = +2

Query: 464 SPAIKSIATQPPVEESRPSR 523
           SPA++++ T+P  +++ P++
Sbjct: 123 SPALRALLTRPQAKKTPPNQ 142


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = +2

Query: 464 SPAIKSIATQPPVEESRPSR 523
           SPA++++ T+P  +++ P++
Sbjct: 123 SPALRALLTRPQAKKTPPNQ 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,976
Number of Sequences: 336
Number of extensions: 2632
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)