Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1014
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   4.9  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    25   6.5  
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    25   6.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.6  

>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 148 QRSTPRSKPLISPKRRPIKLSQSMTK 225
           ++ T + KPL   K++P+K S+ ++K
Sbjct: 182 EKHTVKQKPLREKKKKPLKSSEEISK 207


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 427 STSISGRLPGNCVAGHQKHRDPATGRRIKTVADVEASAKAVEG 555
           +T+ S  LPG  +AGH  HR       +    D +     V+G
Sbjct: 193 NTTPSRVLPGRKMAGHMGHRSRTVKNLLVWAVDADLECILVKG 235


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 603 NRIGVPLNFPDFQFSGALYGFSAGFYV 523
           +R G P+  P +  SGA+ G +  F V
Sbjct: 104 SRDGTPVTMPQYYVSGAISGLANSFLV 130


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 585 LNFPDFQFSGALYGFSAGFYVRDGLDS 505
           +++P+ Q +G++YG+ A   V+ G DS
Sbjct: 1   MSYPN-QMNGSMYGYGANNGVQPGFDS 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,886
Number of Sequences: 5004
Number of extensions: 40591
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)