Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1014
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0735 + 35859984-35860532 31 0.72
01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727... 29 3.8
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376... 28 5.1
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 28 5.1
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274... 28 5.1
10_08_0666 - 19691985-19692216,19692327-19692404,19692508-196928... 27 8.9
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 27 8.9
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 27 8.9
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 27 8.9
03_05_0612 + 26117306-26118045,26118151-26118680,26119247-261192... 27 8.9
01_06_1618 - 38681729-38683989,38685577-38685796 27 8.9
01_05_0110 + 18225431-18226992,18227158-18228132,18228343-182284... 27 8.9
01_01_0994 - 7861310-7862119,7862378-7862498,7862718-7862901,786... 27 8.9
01_01_0602 - 4484972-4485450,4485949-4485997,4486108-4486237,448... 27 8.9
>03_06_0735 + 35859984-35860532
Length = 182
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2
Query: 236 LQRQSRLNTNLAQEQAVDGVWAVEDKKWQALDALKTAEAQLDGAVASQAVQ 388
+QR+ + + + + +A E++KW+A++ L EA G+V S A +
Sbjct: 72 VQREYSVRRDAVEVEVEVSRFAAEERKWEAVEELAAGEALFVGSVVSVAAR 122
>01_07_0083 +
40970890-40971015,40971886-40971994,40972679-40972790,
40972944-40973100,40973609-40973761,40974143-40974292,
40974803-40974999,40975446-40975473
Length = 343
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 418 RCGSHGALS*LYGLTSHCTV*LRFSCFESVQGLPFLI-LNCPNTIDSLFLS 269
+C S + +Y T HC+ CF +Q P+LI + CP D L LS
Sbjct: 84 KCSSPINVYAIYSYTIHCSTQAENICFWFIQNSPYLICVICPE--DHLHLS 132
>05_04_0124 +
18232961-18236636,18236810-18237288,18237549-18237629,
18238033-18238041,18238096-18238248
Length = 1465
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 245 QSRLNTNLAQEQ---AVDGVWAVEDKKWQALDAL 337
Q RL L+Q++ +D VW +++KW+AL L
Sbjct: 257 QQRLREELSQKRYLLVLDDVWNEDEQKWEALRTL 290
>05_04_0122 +
18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 245 QSRLNTNLAQEQ---AVDGVWAVEDKKWQALDAL 337
Q RL L+Q++ +D VW +++KW+AL L
Sbjct: 257 QQRLREELSQKRYLLVLDDVWNEDEQKWEALRTL 290
>01_06_0656 -
30926858-30927040,30927141-30927281,30927373-30927489,
30927696-30927784,30927870-30928010,30928084-30928171,
30928280-30928342,30928544-30928699,30928778-30928870,
30929095-30929176,30929426-30929493,30929575-30930633
Length = 759
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 3 KMRFLIVSALLACVAAAPSHLVPFPAVAYHAV 98
+ RF+ A+ + A+ HL P PA YHA+
Sbjct: 35 RRRFVAFLAISVALVASYHHLAPAPASRYHAL 66
>10_08_0666 -
19691985-19692216,19692327-19692404,19692508-19692837,
19692913-19693158,19693224-19693483,19694469-19695023
Length = 566
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 21 VSALLACVAAAPSHLVPFPAVAY 89
V A+LA APS +PFPA A+
Sbjct: 225 VPAVLAAAGGAPSRRLPFPAGAF 247
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 37 PALQPHLPIWCHSQP-WRTTLWPSQLLSPLY 126
P L +W S+P WRTT+W L S Y
Sbjct: 2675 PETSLQLVMWNGSRPYWRTTVWTGYLTSGQY 2705
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 115 SPLYHLETFRLQRSTPRSKPLISPKRRPIKLSQSMTKTQKITTSKP 252
+P HL+ FRL R+ P + ++ P++L + ++TQ S P
Sbjct: 1797 APAPHLQ-FRLPRAHPTAPVNQQQRQLPVRLESTCSRTQLTPVSTP 1841
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 157 TPRSKP-LISPKRRPIKLSQSMTKTQKITTSKPFKH*SSSGTGCRWC 294
+P S P S + RP+ S + + + T S P +SS T RWC
Sbjct: 409 SPSSSPQCFSTQTRPLVASSNYGSSTRRTRSTPPTSSASSMTSPRWC 455
>03_05_0612 +
26117306-26118045,26118151-26118680,26119247-26119278,
26119910-26121175
Length = 855
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 130 GDRVGTTAGMATAWYATAGNGTRWEGA 50
G GT A M + W + NG W GA
Sbjct: 209 GQAAGTIADMRSDWASDQRNGVYWRGA 235
>01_06_1618 - 38681729-38683989,38685577-38685796
Length = 826
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 52 HLPIWCHSQPWRTTLWPSQLLSPLYHLETFRLQRSTPRSKPLISPKRRPI 201
++ IW + P T +W + +PL +T RL S + L+ R P+
Sbjct: 81 YMGIWYNKIPDHTKVWVANRRAPLSDPDTSRLAISADGNMVLLDRARPPV 130
>01_05_0110 +
18225431-18226992,18227158-18228132,18228343-18228437,
18228556-18228842
Length = 972
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 5 DEISDCFRLTGLRCSRTFPSGAIPS 79
D++ +CF+L L+ S +G+IPS
Sbjct: 576 DDLGNCFKLQSLKMSNNSLNGSIPS 600
>01_01_0994 -
7861310-7862119,7862378-7862498,7862718-7862901,
7862975-7863070,7863428-7863476,7863555-7863596,
7863684-7863836,7865631-7865705,7866462-7866587
Length = 551
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 2 QDEISDCFRLTGLRCSRTFPSGAIPSRGVPRCGHPS 109
+D++SD T + S G +P G P GHP+
Sbjct: 492 EDKLSDIPEQTEAQASELVKEGPVPVEGKPIDGHPT 527
>01_01_0602 -
4484972-4485450,4485949-4485997,4486108-4486237,
4486636-4486778,4486819-4486877,4487167-4487200,
4487489-4487629,4487719-4487907,4488027-4488122,
4488163-4488225,4488588-4489097
Length = 630
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 151 RSTPRSKPLISPKRRPI---KLSQSMTKTQKITTSKP 252
RS PRSK S K +P+ K S+S + + K+ S+P
Sbjct: 560 RSQPRSKSTSSGKAKPVRSAKPSKSSSPSPKVAKSRP 596
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,367,833
Number of Sequences: 37544
Number of extensions: 328420
Number of successful extensions: 1350
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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