Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1014
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                  29   2.2  
SB_43709| Best HMM Match : NodZ (HMM E-Value=0.42)                     28   6.9  
SB_6317| Best HMM Match : RVT_2 (HMM E-Value=2.5e-14)                  28   6.9  
SB_43674| Best HMM Match : RVT_2 (HMM E-Value=2.5e-14)                 28   6.9  
SB_32321| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_53363| Best HMM Match : Peptidase_S15 (HMM E-Value=1.49939e-43)     27   9.1  
SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34)                       27   9.1  
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     27   9.1  
SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 344

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 106 QLLSPLYHLETFRLQRSTPRSKPLISPKRRPIKLSQSMTKTQKITTSKP 252
           ++  P  H +  R ++++P++K   SPK +  K ++    + K  TSKP
Sbjct: 263 KISKPQNHKQAPRPRQASPKTKGQASPKTKSTKPARPRQASPKAKTSKP 311


>SB_43709| Best HMM Match : NodZ (HMM E-Value=0.42)
          Length = 499

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 245 DVVIFCVLVIDCDSFIGRRLGEISGFDLGVDRCS 144
           D+++  +L+++CD FIG R+   S   LG  + S
Sbjct: 303 DLLVDFLLLLECDYFIGTRMSTYSSAVLGTRQFS 336


>SB_6317| Best HMM Match : RVT_2 (HMM E-Value=2.5e-14)
          Length = 813

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 22/55 (40%), Positives = 25/55 (45%)
 Frame = +1

Query: 430 TSISGRLPGNCVAGHQKHRDPATGRRIKTVADVEASAKAVEGPAELEVGKVEGNT 594
           T   G LPGN  A   +H  P TG        V AS   V+GP E    +VEG T
Sbjct: 274 TQTDGLLPGNEEAMLFQH--PTTGNH----DPVNASIPCVDGPQEAPDEEVEGPT 322


>SB_43674| Best HMM Match : RVT_2 (HMM E-Value=2.5e-14)
          Length = 813

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 22/55 (40%), Positives = 25/55 (45%)
 Frame = +1

Query: 430 TSISGRLPGNCVAGHQKHRDPATGRRIKTVADVEASAKAVEGPAELEVGKVEGNT 594
           T   G LPGN  A   +H  P TG        V AS   V+GP E    +VEG T
Sbjct: 274 TQTDGLLPGNEEAMLFQH--PTTGNH----DPVNASIPCVDGPQEAPDEEVEGPT 322


>SB_32321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 105 GWPQRGTPRLGMAPDG 58
           G+P+RG P LG+A DG
Sbjct: 19  GYPERGNPILGLAKDG 34


>SB_53363| Best HMM Match : Peptidase_S15 (HMM E-Value=1.49939e-43)
          Length = 461

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 159 RRSLQPECLQVIEWGQQLGWPQRGTPRLGMAPDGKVRLQ 43
           +R  Q +C +VI+W  +  W       LGM+  G   LQ
Sbjct: 49  KRQEQKDCCEVIDWISKQEWSNGSVGMLGMSWGGFNALQ 87


>SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1074

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 106 QLLSPLYHLETFRLQRSTPRSKPLISPKRRPIKLSQSMTK 225
           QL SPL  LET R        +P +S K+R +K S+   +
Sbjct: 815 QLDSPLQGLETIRDLLQKLEKRPYLSSKQRVLKSSEKKAR 854


>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 109 AGMATAWYATAGNGTRWEGAA 47
           AG  T+W+  AG GT W   A
Sbjct: 190 AGYGTSWHVMAGYGTSWHDMA 210



 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 136 SPGDRVGTTAGMATAWYATAGNGTRWE 56
           SPG      A   T+W+  AG GT W+
Sbjct: 231 SPGTSWQVMARHGTSWHVMAGYGTSWQ 257



 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 136 SPGDRVGTTAGMATAWYATAGNGTRWE 56
           SPG      A   T+W+  AG GT W+
Sbjct: 311 SPGTSWQVMARHGTSWHVMAGYGTSWQ 337


>SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 943

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 145 LQRSTPRSKPLISPKRRPIKLSQSMTKTQK 234
           LQ STPR +P+++ K RP  L    + T++
Sbjct: 799 LQISTPRVRPIMANKVRPFNLQLGSSATRE 828


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,944,516
Number of Sequences: 59808
Number of extensions: 343377
Number of successful extensions: 1146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)