Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1014
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27500.1 68417.m03950 expressed protein non-consensus GA dono...    31   0.80 
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro...    29   2.4  
At2g20585.2 68415.m02406 expressed protein                             29   3.2  
At2g20585.1 68415.m02405 expressed protein                             29   3.2  
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator...    29   3.2  
At3g19920.1 68416.m02522 expressed protein                             28   4.2  
At1g78360.1 68414.m09132 glutathione S-transferase, putative sim...    28   4.2  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    28   5.6  
At2g25130.1 68415.m03006 armadillo/beta-catenin repeat family pr...    28   5.6  
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    27   7.4  
At3g21320.1 68416.m02693 hypothetical protein                          27   9.8  
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta...    27   9.8  

>At4g27500.1 68417.m03950 expressed protein non-consensus GA donor
           splice site at exon 6
          Length = 612

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 43  LQPHLPIWCHSQPWRTTLWPSQLLSPLYHLETFRLQRS-TPRSKPLISPKRRPIKLSQSM 219
           ++  + +WC  + +R   +  ++L  L   +  R  R   P  KPLI+P+  P K + S 
Sbjct: 344 VEKFISLWCSKKNFRED-YEKRILQSLDSRQLSRDGRMRNPDEKPLIAPEAAPSKATPSE 402

Query: 220 TKTQKITTSKP 252
           T+      +KP
Sbjct: 403 TEVVPKAKAKP 413


>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
           protein similar to HMG protein [Arabidopsis thaliana]
           GI:2832361; contains Pfam profile PF00505: HMG (high
           mobility group) box
          Length = 151

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 151 RSTPRSKPLISPKRRPIKLSQSMTK 225
           R  P  KP  SPK++P+KL   M K
Sbjct: 40  RLQPLRKPKTSPKKKPVKLQTKMPK 64


>At2g20585.2 68415.m02406 expressed protein
          Length = 100

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 145 LQRSTPRSKPLISPKRRPIKLS 210
           L R+T R  PL+SP R P++LS
Sbjct: 39  LFRATARRSPLLSPLRNPVELS 60


>At2g20585.1 68415.m02405 expressed protein
          Length = 100

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 145 LQRSTPRSKPLISPKRRPIKLS 210
           L R+T R  PL+SP R P++LS
Sbjct: 39  LFRATARRSPLLSPLRNPVELS 60


>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
           chromosome condensation (RCC1) family protein identical
           to zinc finger protein PRAF1 [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940.
          Length = 1103

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 162 GRRSLQPECLQVIEWGQQ-LGWPQRGTPRLGMAPDGKVRLQRRPVRRKQS 16
           GR S  P  LQ+ +  Q  +G  +R TP+L  AP G       P  R+ S
Sbjct: 758 GRNSQLPSLLQLKDAVQSNIGDMRRATPKLAQAPSGISSRSVSPFSRRSS 807


>At3g19920.1 68416.m02522 expressed protein 
          Length = 416

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 10  DF*LFPPYWPALQPHLPIWCHS 75
           DF +    WP LQP    WCHS
Sbjct: 389 DFSVSASEWPNLQPAYDRWCHS 410


>At1g78360.1 68414.m09132 glutathione S-transferase, putative
           similar to glutathione transferase GI:2853219 from
           [Carica papaya]
          Length = 222

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 162 GRRSLQPECLQVIEWGQQ 109
           G  S++PECL++I WG++
Sbjct: 174 GNFSIEPECLKLIAWGKR 191


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
           to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 70  HSQPWRTTLWPSQLLSPLYHLETFRLQRSTPRSKPLISPKRRPIKLSQSMTKTQKI 237
           H +  + +  P Q L P  H++     R    SKPL  P  + + + +SMTK + I
Sbjct: 432 HLKSTKASKAPKQKLVP-QHMKNSIEHRGQNASKPLYPPSGKSVIVVESMTKAKII 486


>At2g25130.1 68415.m03006 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 468

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -2

Query: 159 RRSLQPECLQVIEWGQQLGWPQRGTPRLGMAPDGKVRL--QRRPVRR 25
           R S   ECL+V++ G+Q+  P  GT  LG      +R+  +R+ V++
Sbjct: 386 RASRVLECLRVVDKGKQVSAPIYGTSSLGRERGHDLRMTDERKAVKQ 432


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 433 SISGRLPGNCVAGHQKHRDPATGRRIKTVADVEASAKAVEG 555
           S +G LP N  +GH    DP      +T A ++   K   G
Sbjct: 50  SCTGELPPNARSGHSFIHDPKVAGETETKAQIKLRFKTAAG 90


>At3g21320.1 68416.m02693 hypothetical protein
          Length = 540

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 25  PPYWPA-LQPHLPIWCHSQPWRTTLWPSQLLSP 120
           P  +P  ++P LP+   S+   T +WP QLL P
Sbjct: 327 PEEYPEHMKPKLPLPSISKELVTPIWPQQLLPP 359


>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226: DnaJ domain
          Length = 797

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +1

Query: 139 FRLQRSTPRSKPLI----SPKRRPIKLSQSMTKTQKITTSKP 252
           F + +S+ +SKPL+    S + +P+ +SQS+  +     S+P
Sbjct: 417 FPVSQSSQKSKPLLVSQSSQRSKPLPVSQSLQNSNPFPVSQP 458


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,348,175
Number of Sequences: 28952
Number of extensions: 235423
Number of successful extensions: 814
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)