Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1013
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       25   0.45 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.8  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   4.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.4  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 193 LSFIPFLSSGLRPYDIYILYCGRTSCESARVGTTTLL 303
           L+++P +S+G  PY+  ILY GRT        T+ LL
Sbjct: 330 LNYVPHISTGFSPYE--ILY-GRTPPNPLDAVTSGLL 363


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 92  SYNNTNCYLLTRNSNKGNSKD 30
           S +NTN    + NSNK NS D
Sbjct: 425 SPSNTNTSTSSTNSNKPNSSD 445


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 615 VKFLLNQLIF*PNRPKI 665
           +K+ +N+LIF  N PK+
Sbjct: 298 IKYSVNKLIFRSNDPKV 314


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 335 FEGWGSRCNYTRGGAR 382
           +  W SR N TRG  R
Sbjct: 543 YPDWSSRANATRGKKR 558


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 335 FEGWGSRCNYTRGGAR 382
           +  W SR N TRG  R
Sbjct: 435 YPDWSSRANATRGKKR 450


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,317
Number of Sequences: 336
Number of extensions: 4535
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)