Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1013
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0265 + 27267361-27268494                                         31   1.2  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.6  
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717...    29   2.7  
11_01_0349 - 2614682-2614721,2614881-2614955,2615346-2615538,261...    29   4.8  
03_03_0251 - 15849211-15851457                                         28   6.3  
02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698...    28   6.3  
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    28   8.3  

>02_05_0265 + 27267361-27268494
          Length = 377

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 305 FLP*SSNVFRFEGWGSRCNYTRGGARYPIRPIVSRITIHWPSFYNVVTGKTLALP 469
           + P S   +   G+G R     GGA      +V+ + +   + YN +TG+ LALP
Sbjct: 88  YSPSSGRTYGVRGYGGRSWLVMGGACQ--EHLVTTVDLSTTALYNPLTGERLALP 140


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 410 ITIHWPSFYNVV-TGKTLALPNLIALQH 490
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>03_05_0062 +
           20370608-20370977,20371062-20371541,20371661-20371731,
           20371836-20371912,20372076-20372223,20372346-20372507,
           20372743-20372940
          Length = 501

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 382 PGPPSSIVTTAAPPFKP 332
           P PP++++TT APP +P
Sbjct: 8   PSPPTTLITTQAPPIQP 24


>11_01_0349 -
           2614682-2614721,2614881-2614955,2615346-2615538,
           2615654-2616287
          Length = 313

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 290 PPPCLFL-P*SSNVFRFEGWGSRCNYTRGGARYPIRP 397
           PPP + + P + N    + W   C  T GG  YP  P
Sbjct: 155 PPPAVRVAPAAQNAGEQQPWSPMCYSTSGGGSYPTSP 191


>03_03_0251 - 15849211-15851457
          Length = 748

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 598 ILTAYNLPFRHSGCATCWEGRSVRASSLLRSWRKGDVLQGD 476
           +LT  +L    + C     GRSV    + R W  GD++ G+
Sbjct: 271 VLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGN 311


>02_02_0120 +
           6984482-6984643,6984748-6984797,6984936-6984996,
           6985574-6985669,6985754-6985903,6986208-6986339,
           6986641-6986768,6987285-6987327,6987935-6988018,
           6989049-6989090,6989264-6989334,6989621-6989674,
           6989789-6989894,6990038-6990106,6990824-6990967,
           6992038-6992113,6992295-6992353
          Length = 508

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 631 FNKNLTRNFNKILTAYNLPFRHSGCATCW-EGRSVRASSLLRSWRKGDVLQGD 476
           FN N T  +N +L A+N    H      W +   +   ++L S +   +L GD
Sbjct: 307 FNSNQTIVYNAVLKAHNAVIAHMRPGVNWLDMHKLAEQTILESLKNERILHGD 359


>02_05_1349 + 35841694-35843738,35844506-35844624,35844932-35845075,
            35845189-35845310,35845474-35845609,35845861-35845957,
            35846727-35846899,35847099-35847262,35847466-35847537,
            35847833-35847928,35847999-35848124
          Length = 1097

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 233  TIYIFYTVVGPLVSLRGWVPPPCLFLP*SSNVFR 334
            T  IFY  V  LV  R ++  PC F P  + +FR
Sbjct: 903  TASIFYRYVDQLVIDRAFIHGPCPFCPLMNGLFR 936


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,977,073
Number of Sequences: 37544
Number of extensions: 498592
Number of successful extensions: 1401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)