Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1013
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14635-8|AAK84492.1|  307|Caenorhabditis elegans Collagen protei...    29   2.4  
L15418-1|AAA17445.1|  307|Caenorhabditis elegans col-36 collagen...    29   2.4  
Z81515-10|CAH60782.1|  413|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81515-8|CAB54234.3|  692|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81515-7|CAB04195.1|  510|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81515-6|CAB04198.1|  405|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z68334-2|CAA92728.2|  797|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z54216-10|CAA90949.2|  797|Caenorhabditis elegans Hypothetical p...    27   9.9  
AF173174-1|AAF13167.1|  796|Caenorhabditis elegans CLC chloride ...    27   9.9  
AC024848-5|AAK68545.1|  254|Caenorhabditis elegans Hypothetical ...    27   9.9  
AB035090-1|BAA86959.1|  797|Caenorhabditis elegans clc chloride ...    27   9.9  

>U14635-8|AAK84492.1|  307|Caenorhabditis elegans Collagen protein
           36 protein.
          Length = 307

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 418 NCNTTHYRANWVPGPPSSIVTTAAPPFKP 332
           N N  H+ A  VPG   SI+++A PP +P
Sbjct: 132 NGNDGHHGAPGVPGKEGSILSSALPPSEP 160


>L15418-1|AAA17445.1|  307|Caenorhabditis elegans col-36 collagen
           protein.
          Length = 307

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 418 NCNTTHYRANWVPGPPSSIVTTAAPPFKP 332
           N N  H+ A  VPG   SI+++A PP +P
Sbjct: 132 NGNDGHHGAPGVPGKEGSILSSALPPSEP 160


>Z81515-10|CAH60782.1|  413|Caenorhabditis elegans Hypothetical
           protein F26H11.2g protein.
          Length = 413

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = -2

Query: 302 SRVVVP-TRADSQEVLPQYKIYISYGRKPELRNGIKDSQ*YSFDKFILFPFQIPS----- 141
           SRV V  TRAD   V    ++ + +      RN +  ++   ++KFI  P  + +     
Sbjct: 244 SRVSVQLTRADYTHVFELLELLLEHRMSTPFRNPVDLNEFPDYEKFIKKPMDLSTITKKV 303

Query: 140 KK*DYLY*RQMILD-GQSYNNTNCY 69
           ++ +YLY  Q + D  Q + N   Y
Sbjct: 304 ERTEYLYLSQFVNDVNQMFENAKTY 328


>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
            F26H11.2c protein.
          Length = 2266

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = -2

Query: 302  SRVVVP-TRADSQEVLPQYKIYISYGRKPELRNGIKDSQ*YSFDKFILFPFQIPS----- 141
            SRV V  TRAD   V    ++ + +      RN +  ++   ++KFI  P  + +     
Sbjct: 2097 SRVSVQLTRADYTHVFELLELLLEHRMSTPFRNPVDLNEFPDYEKFIKKPMDLSTITKKV 2156

Query: 140  KK*DYLY*RQMILD-GQSYNNTNCY 69
            ++ +YLY  Q + D  Q + N   Y
Sbjct: 2157 ERTEYLYLSQFVNDVNQMFENAKTY 2181


>Z81515-8|CAB54234.3|  692|Caenorhabditis elegans Hypothetical
           protein F26H11.2d protein.
          Length = 692

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = -2

Query: 302 SRVVVP-TRADSQEVLPQYKIYISYGRKPELRNGIKDSQ*YSFDKFILFPFQIPS----- 141
           SRV V  TRAD   V    ++ + +      RN +  ++   ++KFI  P  + +     
Sbjct: 523 SRVSVQLTRADYTHVFELLELLLEHRMSTPFRNPVDLNEFPDYEKFIKKPMDLSTITKKV 582

Query: 140 KK*DYLY*RQMILD-GQSYNNTNCY 69
           ++ +YLY  Q + D  Q + N   Y
Sbjct: 583 ERTEYLYLSQFVNDVNQMFENAKTY 607


>Z81515-7|CAB04195.1|  510|Caenorhabditis elegans Hypothetical
           protein F26H11.2f protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = -2

Query: 302 SRVVVP-TRADSQEVLPQYKIYISYGRKPELRNGIKDSQ*YSFDKFILFPFQIPS----- 141
           SRV V  TRAD   V    ++ + +      RN +  ++   ++KFI  P  + +     
Sbjct: 341 SRVSVQLTRADYTHVFELLELLLEHRMSTPFRNPVDLNEFPDYEKFIKKPMDLSTITKKV 400

Query: 140 KK*DYLY*RQMILD-GQSYNNTNCY 69
           ++ +YLY  Q + D  Q + N   Y
Sbjct: 401 ERTEYLYLSQFVNDVNQMFENAKTY 425


>Z81515-6|CAB04198.1|  405|Caenorhabditis elegans Hypothetical
           protein F26H11.2e protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = -2

Query: 302 SRVVVP-TRADSQEVLPQYKIYISYGRKPELRNGIKDSQ*YSFDKFILFPFQIPS----- 141
           SRV V  TRAD   V    ++ + +      RN +  ++   ++KFI  P  + +     
Sbjct: 236 SRVSVQLTRADYTHVFELLELLLEHRMSTPFRNPVDLNEFPDYEKFIKKPMDLSTITKKV 295

Query: 140 KK*DYLY*RQMILD-GQSYNNTNCY 69
           ++ +YLY  Q + D  Q + N   Y
Sbjct: 296 ERTEYLYLSQFVNDVNQMFENAKTY 320


>U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical
           protein K08B12.2a protein.
          Length = 449

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 589 AYNLPFRHSGCATCWEGRSVRASSLLRSWR 500
           A   PF +  C TC    S+RA++++R +R
Sbjct: 77  ASRCPFNNCSCKTCTNVMSMRANAIIRRYR 106


>Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical
           protein W07G4.5b protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 116 RQMILDGQSYNNTNCYLLTRNSNKGNSKDPP 24
           R + LD +SY++ N +LLT+ S    S + P
Sbjct: 142 RTLPLDMESYDDDNMWLLTKKSKTDTSPETP 172


>Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical
           protein W07G4.5a protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 116 RQMILDGQSYNNTNCYLLTRNSNKGNSKDPP 24
           R + LD +SY++ N +LLT+ S    S + P
Sbjct: 194 RTLPLDMESYDDDNMWLLTKKSKTDTSPETP 224


>Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical
           protein T25G3.3 protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 83  YYNSVRLVSFDANTNNPIFLMEFGMEIV*TCRKNII 190
           Y+ +  LVS D   N   +   F +EIV  CR NI+
Sbjct: 218 YHYAQELVSHDTKNNTYDYKHTFCVEIVPICRDNIV 253


>Z68334-2|CAA92728.2|  797|Caenorhabditis elegans Hypothetical
           protein C07H4.2 protein.
          Length = 797

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 637 SFFNPIGRKSAKSLINQ 687
           S+FNP  RKSA+S+I Q
Sbjct: 429 SYFNPFTRKSAQSMIQQ 445


>Z54216-10|CAA90949.2|  797|Caenorhabditis elegans Hypothetical
           protein C07H4.2 protein.
          Length = 797

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 637 SFFNPIGRKSAKSLINQ 687
           S+FNP  RKSA+S+I Q
Sbjct: 429 SYFNPFTRKSAQSMIQQ 445


>AF173174-1|AAF13167.1|  796|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 637 SFFNPIGRKSAKSLINQ 687
           S+FNP  RKSA+S+I Q
Sbjct: 429 SYFNPFTRKSAQSMIQQ 445


>AC024848-5|AAK68545.1|  254|Caenorhabditis elegans Hypothetical
           protein Y67D8A.3 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 577 PFRHSGCATCWEGRSVRASSLLRSWR 500
           P++   C TC    S+RA++L+R +R
Sbjct: 51  PYKDCSCGTCASVMSMRANALIRRFR 76


>AB035090-1|BAA86959.1|  797|Caenorhabditis elegans clc chloride
           channel homologue protein.
          Length = 797

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 637 SFFNPIGRKSAKSLINQ 687
           S+FNP  RKSA+S+I Q
Sbjct: 429 SYFNPFTRKSAQSMIQQ 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,237,546
Number of Sequences: 27780
Number of extensions: 402985
Number of successful extensions: 1021
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)