Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1013
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20760.1 68418.m02467 hypothetical protein                          28   5.2  
At5g37630.1 68418.m04532 chromosome condensation family protein ...    28   6.9  
At2g27950.1 68415.m03388 expressed protein                             28   6.9  
At1g42470.1 68414.m04897 patched family protein similar to SP|O1...    28   6.9  

>At5g20760.1 68418.m02467 hypothetical protein
          Length = 220

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 38  NFLYYCYVLEDSN*YYYNSVRLVSFDANTNNPIFLM 145
           NF   C   E++   YY ++RL+  + N    +FL+
Sbjct: 69  NFFVRCLEFENATAMYYEAIRLIVREENVMGSLFLL 104


>At5g37630.1 68418.m04532 chromosome condensation family protein
            contains pfam profile: PF04154 chromosome condensation
            protein 3, C-terminal region
          Length = 1051

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 471  T*SPCSTSPFRQLRNSEEARTDRPSQQVAQP 563
            T +PCST P R  R +    T    ++VA P
Sbjct: 967  TPAPCSTKPARSRRRARIEETSSDEEEVASP 997


>At2g27950.1 68415.m03388 expressed protein 
          Length = 767

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
 Frame = -3

Query: 544 EGRS-VRASSLLRSWRKGDVLQGD*VG*RQGFPSHDVVKRRPVNCNTTHYRANWVPGPPS 368
           EGRS VRASSLL+ WR+   L+ D V    G       +RR V+  +   R N   G  S
Sbjct: 31  EGRSSVRASSLLQMWRE---LEDDHV---MGHARERDGERRSVSSPSNTMRGN---GCDS 81

Query: 367 SIVTTAAPPFKPKHITASRQK*AGWWYPPAQTHKRSYHS 251
           +I   +A       +     +  GW   P Q+H  S++S
Sbjct: 82  NI---SAHDIVRDSVNLGENELGGW--SPTQSHVGSHNS 115


>At1g42470.1 68414.m04897 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (GB:AAB63982) (GI:2276463); contains Pfam
           profile PF02460 Patched family
          Length = 1272

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 136 FFDGIWNGNSMNLSKEYY*LSFIPF--LSSGLRPYDIYILYCGRTS 267
           +F  I     +NL    Y ++F+P   +SSG+RP ++ I  CG  S
Sbjct: 171 WFTFIGQKAGVNLPGSPYGIAFLPTPPVSSGMRPMNVSIYSCGDES 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,230,849
Number of Sequences: 28952
Number of extensions: 375675
Number of successful extensions: 910
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)