Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1011
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    30   0.25 
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    28   1.3  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   7.2  

>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 21/74 (28%), Positives = 38/74 (51%)
 Frame = -2

Query: 415 EEPARNSVDICRMTLILHLSELNYNISFEV*SRLLKIKFYLLSDYLT*SVILLIVSTHNS 236
           EE  +NS  +C+  L   L EL     FEV S  +++ F  LS  +  +++   ++  N+
Sbjct: 436 EELTQNSETLCKEKLKEKLEELFTGFEFEV-SEAVEVAFQKLSHNVWDTLLNEFLAAQNT 494

Query: 235 DRYLIFNNLIPYYL 194
               I  N++P+Y+
Sbjct: 495 TIEKI-KNIVPFYV 507


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 553 CTVFEQNSIFISTKYFNSFLLLSDFTRT 470
           C ++  N+ +IS  Y  +  L +DFTRT
Sbjct: 425 CNIWSDNADYISLSYSGTGALKTDFTRT 452


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 547 VFEQNSIFISTKYFNSFLLLSDFTRTDAH 461
           +FEQ+ +F +  + N  L+L  F + D H
Sbjct: 34  LFEQDHVFCTFNHPNMGLVLISFAKVDGH 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,892
Number of Sequences: 5004
Number of extensions: 34997
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)