Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1006
(422 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 128 5e-31
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 66 3e-12
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 56 3e-09
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 44 1e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 39 4e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 35 0.005
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 35 0.005
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.30
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 27 0.91
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 2.8
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.8
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 26 2.8
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 25 6.4
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 6.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 128 bits (308), Expect = 5e-31
Identities = 54/59 (91%), Positives = 56/59 (94%)
Frame = +1
Query: 244 GKAPHHGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 420
G+ HHG+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNEL
Sbjct: 36 GRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNEL 94
Score = 77.4 bits (182), Expect = 9e-16
Identities = 33/37 (89%), Positives = 37/37 (100%)
Frame = +2
Query: 143 DEKVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 253
+E++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRP
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP 38
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 65.7 bits (153), Expect = 3e-12
Identities = 27/58 (46%), Positives = 39/58 (67%)
Frame = +1
Query: 244 GKAPHHGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE 417
G+ H VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++
Sbjct: 40 GRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQ 97
Score = 48.8 bits (111), Expect = 3e-07
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 161 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGR 250
+ +DNGSG KAGFAGDD P+ +FP+ VGR
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGR 41
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 55.6 bits (128), Expect = 3e-09
Identities = 20/45 (44%), Positives = 36/45 (80%)
Frame = +1
Query: 286 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 420
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKL 94
Score = 47.6 bits (108), Expect = 8e-07
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +2
Query: 155 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPPIMA 265
A +V+DNG+G K G+A D+ PR FPSIVGRP + A
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRA 40
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 43.6 bits (98), Expect = 1e-05
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 289 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 420
D ++G++A K +L YPI HG + NWD ME+ W + + L
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYL 117
Score = 40.7 bits (91), Expect = 9e-05
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 161 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 244
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 38.7 bits (86), Expect = 4e-04
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +2
Query: 146 EKVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 247
++V+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 35.1 bits (77), Expect = 0.005
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 146 EKVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 247
E++ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.1 bits (77), Expect = 0.005
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 161 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGR 250
LV+DNGS +AG+ G+ P+ VF ++V R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSR 56
Score = 30.3 bits (65), Expect = 0.13
Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 277 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTF 408
+ + + VG++ + G ++ + P E +++NWD ME++ +TF
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTF 106
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.1 bits (62), Expect = 0.30
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -3
Query: 378 IPVSDDSVFDGVFEGQDTSFALCLISYIRVLLSHTDHHAMMGGLPTIEGNTARGASSPAK 199
+P + +V +TSFAL S L A + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 198 PALHIP 181
P L+ P
Sbjct: 123 PQLNSP 128
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 0.91
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 198 VSQEMMLLAPCSPRSWEGPPSWRDGRYGTEGLLCRR*GTEQK 323
+ ++ LL P WEG +W+DG G +L E+K
Sbjct: 243 LDKQQYLLIPFWSTVWEGSTNWQDGMIGILVILSENDFEEKK 284
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 2.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 342 FEGQDTSFALCLISYIRVLLSHTDHHA 262
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +1
Query: 346 PIEHGIVTNWDDMEKIWHHTF 408
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 2.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 259 HGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 351
+ +M+G +Y+G AQ KR +LT + I
Sbjct: 163 YAIMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 6.4
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 163 QRGNFFVAHLEL-VKLVRCRCDKMKIKRPAVTANREKQIPIAGRCPC 26
++ +F ++E V+++ CRC K P ++ + + CPC
Sbjct: 486 EKRKYFEINIETPVRILSCRCVKDSTLLPPYESSSQGDNQVLLPCPC 532
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 6.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 161 LVVDNGSGMCKAGFAG 208
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,335
Number of Sequences: 5004
Number of extensions: 39582
Number of successful extensions: 100
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -