Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1006
(422 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 127 4e-30
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 127 4e-30
SB_56| Best HMM Match : Actin (HMM E-Value=0) 127 4e-30
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 127 4e-30
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 127 4e-30
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 7e-24
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 1e-08
SB_54| Best HMM Match : Actin (HMM E-Value=0) 54 5e-08
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 52 1e-07
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 48 2e-06
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 44 4e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.042
SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.17
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.30
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.30
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.69
SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5) 29 1.2
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_5505| Best HMM Match : ResIII (HMM E-Value=0.55) 27 4.8
SB_58408| Best HMM Match : Methyltransf_2 (HMM E-Value=3.7e-12) 27 8.5
SB_44488| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.6) 27 8.5
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06) 27 8.5
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 127 bits (306), Expect = 4e-30
Identities = 55/59 (93%), Positives = 56/59 (94%)
Frame = +1
Query: 244 GKAPHHGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 420
G+ H GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 95
Score = 78.6 bits (185), Expect = 2e-15
Identities = 35/39 (89%), Positives = 38/39 (97%)
Frame = +2
Query: 137 MCDEKVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 253
M D+++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 127 bits (306), Expect = 4e-30
Identities = 55/59 (93%), Positives = 56/59 (94%)
Frame = +1
Query: 244 GKAPHHGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 420
G+ H GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 94
Score = 76.2 bits (179), Expect = 1e-14
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +2
Query: 143 DEKVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 253
++ VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 38
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 127 bits (306), Expect = 4e-30
Identities = 55/59 (93%), Positives = 56/59 (94%)
Frame = +1
Query: 244 GKAPHHGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 420
G+ H GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 94
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/37 (91%), Positives = 37/37 (100%)
Frame = +2
Query: 143 DEKVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 253
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 38
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 127 bits (306), Expect = 4e-30
Identities = 55/59 (93%), Positives = 56/59 (94%)
Frame = +1
Query: 244 GKAPHHGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 420
G+ H GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 95
Score = 83.4 bits (197), Expect = 7e-17
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +2
Query: 137 MCDEKVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 253
MCD+ VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 127 bits (306), Expect = 4e-30
Identities = 55/59 (93%), Positives = 56/59 (94%)
Frame = +1
Query: 244 GKAPHHGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 420
G+ H GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 95
Score = 79.0 bits (186), Expect = 1e-15
Identities = 34/39 (87%), Positives = 37/39 (94%)
Frame = +2
Query: 137 MCDEKVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 253
M D+ +AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRP
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP 39
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 106 bits (255), Expect = 7e-24
Identities = 48/55 (87%), Positives = 49/55 (89%)
Frame = +1
Query: 244 GKAPHHGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 408
G+ H GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 77.4 bits (182), Expect = 5e-15
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +2
Query: 143 DEKVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 253
D+ VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRP
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP 38
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 56.0 bits (129), Expect = 1e-08
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +1
Query: 286 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 408
KD VGDEA R +L + YP+++GIV NWDDM+ +W +TF
Sbjct: 53 KDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTF 93
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +2
Query: 155 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPPIMA*WSVWD 283
+ +V DNG+G K G+AG + P +FPS+VGRP I + V D
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGD 49
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 54.0 bits (124), Expect = 5e-08
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = +2
Query: 161 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 253
+V+DNGSG CKAG + D++PR VFP+IVGRP
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRP 2127
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 52.4 bits (120), Expect = 1e-07
Identities = 24/36 (66%), Positives = 26/36 (72%)
Frame = +2
Query: 146 EKVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 253
E LV+D GS M K GFAGDDAP+ VFP IVGRP
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRP 1389
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 48.4 bits (110), Expect = 2e-06
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = +2
Query: 125 Y*FKMCDEKVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 253
Y FK+ A+V+DNG G+ K GFAGD PR + P++VG P
Sbjct: 691 YSFKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNP 733
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 44.4 bits (100), Expect = 4e-05
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +1
Query: 274 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 420
G+ D ++GDEA K T K+PI H IV +WD ME+ W + L
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYL 325
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = -2
Query: 241 DRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 143
D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 7 DGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.042
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 295 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 417
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 149 KVAALVVDNGSGMCKAGFAGDDAPRAV 229
K+A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 32.7 bits (71), Expect = 0.13
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 130 LVKLVRCRCDKMKIKRPAVTANREKQIPIAGRCPCSTQC 14
L++L C C+K + KR + + Q+P C C C
Sbjct: 620 LLELTTCSCEKSRCKRDDLCPCKSNQMPCTEACQCMNTC 658
>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 32.3 bits (70), Expect = 0.17
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 142 AHLELVKLVRCRCDKMKIKRPAVTANREKQIPIAGRCPCSTQ 17
A L L+KL CRC K +R + + + IP C C+++
Sbjct: 1296 APLSLLKLTTCRCVKTACRRDDLCSCKANDIPCTEACLCTSE 1337
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.30
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 234 GNTARGASSPAKPALHIPEPLSTT 163
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.30
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 234 GNTARGASSPAKPALHIPEPLSTT 163
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 0.69
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 234 GNTARGASSPAKPALHIPEPLSTT 163
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5)
Length = 554
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 228 CSPRSWEGPPSWRDGRYGTEGLLCR 302
C+PR W P R+GR T L CR
Sbjct: 274 CAPRQWLEPTEKREGREVTNKLRCR 298
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 234 GNTARGASSPAKPALHIPEPLSTT 163
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 234 GNTARGASSPAKPALHIPEPLSTT 163
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_5505| Best HMM Match : ResIII (HMM E-Value=0.55)
Length = 1346
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 345 VFEGQDTSFALCLISYIRVLLSHTDHHAMMGGLPTIEG 232
V EG D FA C++SY+ LL + H + GLP G
Sbjct: 238 VREGGDV-FANCVVSYVARLLRNRGHSRSL-GLPKTRG 273
>SB_58408| Best HMM Match : Methyltransf_2 (HMM E-Value=3.7e-12)
Length = 440
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 74 HCRAFNFHLVTPTSY*FY 127
HC AF+ VTP SY +Y
Sbjct: 173 HCEAFSSSSVTPASYSYY 190
>SB_44488| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.6)
Length = 194
Score = 26.6 bits (56), Expect = 8.5
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = -3
Query: 366 DDSVFDGVFEGQDTSFALCLISYIRVLLSHTDHHAMMGGLPTIEGNTARGASSPAKPALH 187
DD D +G+ LC +Y+ L+ H D + I A G S P
Sbjct: 87 DDDDDDDDDDGRVVVIVLCHTTYLTYLIRHDDVMYCFSPVVAITAGVAVGFSVTTAPTNQ 146
Query: 186 IPEP-LSTTNAATFSSHI 136
P L+TTN ++ +
Sbjct: 147 QSCPCLATTNQCACATRV 164
>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
Length = 425
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 199 TGLAHTGAIVYYQRGNFFVAHLELVKLVRC 110
+G +T A VY+QRGN + H + V + C
Sbjct: 358 SGRGNTWA-VYFQRGNTWTVHFQRVNTMGC 386
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,332,797
Number of Sequences: 59808
Number of extensions: 356535
Number of successful extensions: 961
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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