Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1006
         (422 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   4.3  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   4.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   5.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.5  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           20   10.0 

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 91  IKRPAVTANREKQIPIAGR 35
           IK P + ANR K   IAG+
Sbjct: 284 IKLPKLAANRAKLEEIAGK 302


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 182 GMCKAGFAGD 211
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 241 DRGEHGARSIISCETGLA 188
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 241 DRGEHGARSIISCETGLA 188
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = -2

Query: 262 HDGGPSHDRGEHGARSIISCETGLAHTG 179
           +D G  +    +     + C TGL H G
Sbjct: 255 NDNGNGNGASNNNNNGDMFCHTGLGHYG 282


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/36 (22%), Positives = 15/36 (41%)
 Frame = -3

Query: 240  IEGNTARGASSPAKPALHIPEPLSTTNAATFSSHIL 133
            + G+T  G    +K A  +P         +F  H++
Sbjct: 1289 VTGSTRVGEGQSSKVAAQVPTNRVPARITSFGGHVV 1324


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/36 (22%), Positives = 15/36 (41%)
 Frame = -3

Query: 240  IEGNTARGASSPAKPALHIPEPLSTTNAATFSSHIL 133
            + G+T  G    +K A  +P         +F  H++
Sbjct: 1285 VTGSTRVGEGQSSKVAAQVPTNRVPARITSFGGHVV 1320


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 53  LFLTVSSHCRAFNFHLV 103
           L + V+S C+AF +H V
Sbjct: 284 LRMGVASFCKAFPWHFV 300


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 32 TPAGNRYLFLT 64
          T AGNRY++L+
Sbjct: 62 TLAGNRYIYLS 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,302
Number of Sequences: 438
Number of extensions: 2971
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)