Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1005
         (610 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   1.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   3.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   3.5  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 414 RHSQPVPGLT*GTQCTLFPGTCYQKAWTLHN 322
           ++S  + G+   TQC + PG  ++  + +HN
Sbjct: 141 KNSPYMDGVPFVTQCPIHPGMTFRYHFNVHN 171


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 313 STDIMESPSLLVTSPWKKSTLGTSRQPRHWLTMPTSSITFKKMKSN 450
           S D   S + +  S ++  T GT+  P   L  P   IT+   + N
Sbjct: 20  SGDSTSSATSIDLSTFRVPTYGTTSHPTSKLVPPDERITYSWTEIN 65


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 313 STDIMESPSLLVTSPWKKSTLGTSRQPRHWLTMPTSSITFKKMKSN 450
           S D   S + +  S ++  T GT+  P   L  P   IT+   + N
Sbjct: 20  SGDSTSSATSIDLSTFRVPTYGTTSHPTSKLVPPDERITYSWTEIN 65


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,363
Number of Sequences: 336
Number of extensions: 3638
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)