Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1005
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    29   0.53 
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   1.6  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   3.7  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   6.5  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   6.5  

>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 40  YLLLSMFLFVNVNTHYLYQTKWFEVPLDH 126
           YLL++ + F + N H+ Y TK F   + H
Sbjct: 288 YLLMTFWQFSSDNNHFYYNTKLFAAKVHH 316


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 312 EHRYYGESKPFGNKSLEKEYIGYL 383
           E +Y GES P G   L ++Y+ YL
Sbjct: 92  ERQYDGESSPKGYSDLIRDYVDYL 115


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 97  FDTNNEYSHSRIETLRATNNAT 32
           F+T N+YS SR +T  +++N T
Sbjct: 257 FNTKNDYSSSRSKTTASSSNGT 278


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 124 DREALQTI*FDTNNEYSHSRIETLRATNNAT 32
           DREA   +  D NN+ S S  E L + NN T
Sbjct: 682 DREARPQLLLDDNNDSSSSSSEHLISFNNHT 712


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 414 DLINYLQKDEIKPRYPVI 467
           D ++++QKDE +P+ PV+
Sbjct: 687 DKLHFVQKDESRPKEPVV 704


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,736
Number of Sequences: 5004
Number of extensions: 59499
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)