Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1005
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736... 81 9e-16
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 75 9e-16
10_08_0605 + 19158167-19158309,19158726-19158834,19159099-191592... 53 2e-07
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689... 48 6e-06
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875... 31 0.71
12_02_1224 + 27158810-27161366,27161593-27161969 29 2.9
03_03_0229 - 15612829-15612897,15612982-15613083,15613503-156135... 29 2.9
>06_03_0934 -
26073084-26073220,26073296-26073345,26073465-26073634,
26073651-26073803,26073877-26074032,26074227-26074350,
26075066-26075178,26076336-26076469,26077391-26077578,
26077718-26078139
Length = 548
Score = 80.6 bits (190), Expect = 9e-16
Identities = 39/66 (59%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Frame = +3
Query: 312 EHRYYGESKPFGNKSLEK-EYIGYLTSAQALADYADLINYLQKDEIKPRYPVIAFGGSYG 488
+HR+YGESKPFGN+S E +GYLTS QALAD+A LI L+ + PV+ FGGSYG
Sbjct: 143 QHRFYGESKPFGNESNSSPEKLGYLTSTQALADFAVLITSLKHNLSAVSSPVVVFGGSYG 202
Query: 489 GMLAAY 506
GMLA++
Sbjct: 203 GMLASW 208
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Frame = +1
Query: 91 YQTKWFEVPLDHFGL--GRKETFKIKYLENEDYWNKNEY------GPIFFYTGNEGQIE 243
+ +F LDHF F KYL N+ +W ++ GPIF YTGNEG IE
Sbjct: 82 FTAHYFPQELDHFTFTPNASAVFYQKYLVNDTFWRRSAAAGETPAGPIFVYTGNEGDIE 140
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 506 YRIKYPHLVAGAIAASASIHMF 571
+R+KYPH+ GA+A+SA I F
Sbjct: 209 FRLKYPHVTIGAVASSAPILQF 230
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 75.4 bits (177), Expect(2) = 9e-16
Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Frame = +3
Query: 312 EHRYYGESKPFGNKSL---EKEYIGYLTSAQALADYADLINYLQKDEIKPRYPVIAFGGS 482
+HRYYGES PFG+K + + YLT+ QALADYA L+ L+K+ PV+ FGGS
Sbjct: 160 QHRYYGESMPFGSKDKAYNNSKSLAYLTAEQALADYAVLLTDLKKNLSSEGSPVVLFGGS 219
Query: 483 YGGMLAAYI 509
YGGMLAA++
Sbjct: 220 YGGMLAAWM 228
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = +1
Query: 85 YLYQTKWFEVPLDHFGLGRKET------FKIKYLENEDYWNKNEYGPIFFYTGNEGQIEA 246
Y Y+T++F LDHF +E F+ +YL GPIFFY GNEG I
Sbjct: 46 YDYETRYFRQRLDHFSFLEEEGEEGDGFFQQRYLVGRGGGWAGAGGPIFFYCGNEGDIAW 105
Query: 247 FA 252
FA
Sbjct: 106 FA 107
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 509 RIKYPHLVAGAIAASASIHMF 571
R+KYPH+ GA+A+SA I F
Sbjct: 229 RLKYPHIAVGALASSAPILQF 249
Score = 25.4 bits (53), Expect(2) = 9e-16
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 258 TGFMWEIAAEYQAKIVFAE 314
+G +WE A + A +VFAE
Sbjct: 110 SGLVWEAATRFAALVVFAE 128
>10_08_0605 +
19158167-19158309,19158726-19158834,19159099-19159224,
19159388-19159543,19159623-19159805,19159904-19160020,
19160528-19160581,19160661-19160732,19160947-19161058,
19161188-19161284,19161434-19161528,19162093-19162167,
19162307-19162390,19162602-19162700,19163167-19163207
Length = 520
Score = 52.8 bits (121), Expect = 2e-07
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Frame = +3
Query: 276 IAAEYQAKIVFAEHRYYGESKPFGNKSLEKEYIGYLTSAQALADYADLINYLQKDEIKPR 455
+A ++ A +V EHRYYG+S PF +SL E + +L+S QAL D A Y Q + + +
Sbjct: 128 MAKKFGAAVVSPEHRYYGKSSPF--ESLTTENLRFLSSKQALFDLAVFRQYYQ-ETLNAK 184
Query: 456 Y-------PVIAFGGSYGGMLAAYIG*SIP 524
Y FGGSY G L+A+ P
Sbjct: 185 YNRSGADSSWFVFGGSYAGALSAWFRLKFP 214
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 494 VSCLYRIKYPHLVAGAIAASASI 562
+S +R+K+PHL G++A+S +
Sbjct: 205 LSAWFRLKFPHLTCGSLASSGVV 227
>10_08_0607 +
19168164-19168358,19168594-19168716,19168791-19168946,
19169129-19169314,19169467-19169583,19169721-19169774,
19169854-19169925,19170430-19170535,19170658-19170754,
19171090-19171184,19172318-19172420,19172699-19172886,
19174928-19175183,19177187-19177325
Length = 628
Score = 48.0 bits (109), Expect = 6e-06
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Frame = +3
Query: 276 IAAEYQAKIVFAEHRYYGESKPFGNKSLEKEYIGYLTSAQALAD-------YADLINYLQ 434
++ ++ A +V EHRYYG+S PF +SL E + +L+S QAL D Y +++N
Sbjct: 108 LSKKFGAAVVTPEHRYYGKSSPF--ESLTTENLRFLSSKQALFDLVAFRQHYQEILNARY 165
Query: 435 KDEIKPRYPVIAFGGSYGGMLAAYIG*SIP 524
P FG SY G L+A+ P
Sbjct: 166 NRSSGFDNPWFVFGVSYSGALSAWFRLKFP 195
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/58 (29%), Positives = 22/58 (37%)
Frame = +1
Query: 82 HYLYQTKWFEVPLDHFGLGRKETFKIKYLENEDYWNKNEYGPIFFYTGNEGQIEAFAN 255
H + +W + LDHF FK +Y E DY GP+F E N
Sbjct: 47 HLTTEERWMDQRLDHFSPTDHRQFKQRYYEFADYHAGG--GPVFLRICGESSCNGIPN 102
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 494 VSCLYRIKYPHLVAGAIAASASI 562
+S +R+K+PHL G++A+S +
Sbjct: 186 LSAWFRLKFPHLTCGSLASSGVV 208
>08_01_0889 +
8753877-8754236,8754995-8755054,8755174-8755250,
8755481-8755622,8755736-8755772,8755852-8755921,
8756021-8756212,8756321-8756413,8756545-8756773,
8756861-8756944,8757041-8757192,8757279-8757375,
8757576-8757725,8757813-8757890,8757982-8758104,
8758169-8758315,8758418-8758472,8758807-8758874
Length = 737
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 288 YQAKIVFAEHRYYGESKPFGNKSLEKEYIGYLTSAQALADYADLINYLQKDEI 446
Y + F H + P G SL + +T ALA YADL+N +K +
Sbjct: 371 YSPEAFFTIHADKEDGTPLGGGSLAPPFPSPITVRNALARYADLLNSPKKSAL 423
>12_02_1224 + 27158810-27161366,27161593-27161969
Length = 977
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 178 DYWNKNEYGPIFFYTGNEGQIEAFANTPASCGR*RLNI 291
D+ N N GP+ EG +E+ A P C RLN+
Sbjct: 543 DFSNNNLSGPVPLQLIREGLLESVAGNPGLCVAFRLNL 580
>03_03_0229 -
15612829-15612897,15612982-15613083,15613503-15613553,
15613637-15613706,15613816-15613984,15614217-15614326,
15614443-15614510,15615412-15615480,15616649-15616692,
15616803-15617050,15617620-15617633
Length = 337
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +3
Query: 384 TSAQALADYADLINYLQKDEIKPRY---PVIAFGGSYGGMLAAYIG*SI 521
T QA AD +L+ L I P P+ G +YGG LAA IG S+
Sbjct: 26 TDVQAAADATELVKALAT-RILPDLKSSPLFIVGQAYGGKLAAMIGASL 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,365,806
Number of Sequences: 37544
Number of extensions: 379043
Number of successful extensions: 809
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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