Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1005
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)        102   3e-22
SB_40562| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   3e-10
SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)               56   3e-08
SB_12974| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   5e-08
SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)                 50   2e-06
SB_32432| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)                    27   9.0  
SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)                      27   9.0  

>SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)
          Length = 1224

 Score =  102 bits (244), Expect = 3e-22
 Identities = 49/100 (49%), Positives = 64/100 (64%)
 Frame = +3

Query: 210 FLLHGK*GSNRSICQYTGFMWEIAAEYQAKIVFAEHRYYGESKPFGNKSLEKEYIGYLTS 389
           F   G  G      + +GF++E A  + A ++F EHRYYGES PFG  S + E IGYL+ 
Sbjct: 62  FFYSGNEGGITGFWENSGFVFEAAKNFSALVIFGEHRYYGESLPFGQDSFKIENIGYLSI 121

Query: 390 AQALADYADLINYLQKDEIKPRYPVIAFGGSYGGMLAAYI 509
            QALAD+A LI  L+K       PV++FGGSYGGML+AY+
Sbjct: 122 EQALADFATLIPALKKQFKAEEKPVVSFGGSYGGMLSAYL 161



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 26/53 (49%), Positives = 33/53 (62%)
 Frame = +1

Query: 91  YQTKWFEVPLDHFGLGRKETFKIKYLENEDYWNKNEYGPIFFYTGNEGQIEAF 249
           ++T  FE  +DHF   +  TFK +YL  E YW+    GPIFFY+GNEG I  F
Sbjct: 24  FKTGTFEQTVDHFNFIQSGTFKQRYLYTEKYWDGK--GPIFFYSGNEGGITGF 74



 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 458 PSYSFWRLVWWNVSCLYRIKYPHLVAGAIAASASIHMFS 574
           P  SF       +S   R KYP+++  A+AASA I+  +
Sbjct: 145 PVVSFGGSYGGMLSAYLRFKYPNVIQAALAASAPIYFIA 183


>SB_40562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 30/56 (53%), Positives = 34/56 (60%)
 Frame = +1

Query: 88  LYQTKWFEVPLDHFGLGRKETFKIKYLENEDYWNKNEYGPIFFYTGNEGQIEAFAN 255
           +Y+TK+F   LDHF      TF  +YL N   W K   GPIFFYTGNEG I  FAN
Sbjct: 48  VYETKYFTQKLDHFNFRTSATFSQRYLVNIANWRKG--GPIFFYTGNEGDITWFAN 101



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +3

Query: 327 GESKPFGNKSLEKEYIGYLTSAQALADYADLINYLQKDEIKPRYPVIAFGGS 482
           G+   F N +  K Y+GYL+S QALAD+A LI +++  +I+ +   I+   S
Sbjct: 94  GDITWFANNTSPK-YLGYLSSEQALADFATLIRHIKVKQIQRQEVTISGNNS 144


>SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 563

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
 Frame = +3

Query: 261 GFMWEIAAEYQAKIVFAEHRYYGESKPFGNKSLEKEYIGYLTSAQALADYADLINYLQ-K 437
           G + +IA EY A +   EHRYYG+S  FG   L+ + + YL+S  ALAD A  + + + K
Sbjct: 168 GHIVDIAKEYGALLFAVEHRYYGKSNFFG--CLKTKNMRYLSSQLALADLAQFVAHAKNK 225

Query: 438 DEIKPRYPVIAFGGSYGGMLAAY 506
             +  +   I +GGSY G L+A+
Sbjct: 226 FGLTDKNKWITYGGSYPGSLSAW 248



 Score = 35.5 bits (78), Expect = 0.034
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +2

Query: 491 NVSCLYRIKYPHLVAGAIAASASI 562
           ++S  +RIKYPHLV GA+A+SA +
Sbjct: 244 SLSAWFRIKYPHLVIGAVASSAPV 267


>SB_12974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = +3

Query: 261 GFMWEIAAEYQAKIVFAEHRYYGESKPFGNKSLE 362
           GFMW+ A E+ A +VFAEHRYYGE+ PFG +S E
Sbjct: 1   GFMWDNAKEFGAMLVFAEHRYYGETLPFGKRSYE 34


>SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 826

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 33/100 (33%), Positives = 47/100 (47%)
 Frame = +3

Query: 210 FLLHGK*GSNRSICQYTGFMWEIAAEYQAKIVFAEHRYYGESKPFGNKSLEKEYIGYLTS 389
           FL+ G  G+   +    G M + A  + A     EHR+YG+S P     +    + YL S
Sbjct: 120 FLMVGGEGAISPVWVLIGNMMKYAEGFGAMAFILEHRFYGQSHP--RSDMSDANLKYLNS 177

Query: 390 AQALADYADLINYLQKDEIKPRYPVIAFGGSYGGMLAAYI 509
            QALAD A     +           I+FGGSY G L+A++
Sbjct: 178 EQALADLAAFRQAMSVKFNLTDSKWISFGGSYPGSLSAWL 217



 Score = 36.7 bits (81), Expect = 0.015
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 103 WFEVPLDHFGLGRKETFKIKYLENEDYWNKNEYGPIFFYTGNEGQI 240
           WF   LDHF     ET+K ++  N D + K +  P+F   G EG I
Sbjct: 85  WFIQRLDHFDDSNTETWKQRFYYN-DTFRKTKDSPVFLMVGGEGAI 129


>SB_32432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +3

Query: 324 YGESKPFGNKSLEKEYIGYLTSAQALADYADLINYLQKDEIKPRYPVIAFGGSYGGMLAA 503
           Y  S  FG KSL+   IG + +       A   N L +    P + +   GGS+GG L+A
Sbjct: 418 YKGSVGFGRKSLQS-IIGKVGTQDVREVMAAAENVLSRGAHDP-HNLFVMGGSHGGFLSA 475

Query: 504 YI 509
           ++
Sbjct: 476 HL 477


>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 606 PY*RDRTSSFRENMCMEAEAAIAPATRWGYFILYKQLTFHHT 481
           P   + TSS  E + + A   I+P T+W  +  Y+ +  + T
Sbjct: 552 PSLNETTSSAYETIAVNATPTISPVTKWDNYSAYETIAVNAT 593


>SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)
          Length = 610

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 447 KPRYPVIAFGGSYGGMLAAYIG*SIPT 527
           K  YPV +F G  GG L  +IG S+ T
Sbjct: 172 KRNYPVESFLGDVGGQLGLWIGVSVIT 198


>SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)
          Length = 695

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 456 YPVIAFGGSYGGMLAAYIG*SIPT*WPEL*PPQLPYTCFPGMTKCDLFN 602
           +P +AF  S G +  + +   I        PP  PY C  G  KC  +N
Sbjct: 319 FPNVAFSPSTGTLSMSVVPSKIQGQRVPTLPPAEPYACSTGGVKCVCYN 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,842,109
Number of Sequences: 59808
Number of extensions: 427004
Number of successful extensions: 847
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)