Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1005
(610 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 30 0.015
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 22 4.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.4
DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein p... 21 9.4
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 30.3 bits (65), Expect = 0.015
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 395 LG*REVPNVLFFQGLVTKRLGLSIISVLCEN 303
+G E PNV+F QG+VTK + II+ EN
Sbjct: 688 MGQFEHPNVIFLQGVVTKSNPVMIITEFMEN 718
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 22.2 bits (45), Expect = 4.1
Identities = 9/34 (26%), Positives = 15/34 (44%)
Frame = +1
Query: 172 NEDYWNKNEYGPIFFYTGNEGQIEAFANTPASCG 273
+ +Y+N N Y +++ QI P CG
Sbjct: 314 SNNYYNNNNYKKLYYNINYIEQIPIPVPVPIYCG 347
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.4
Identities = 6/19 (31%), Positives = 14/19 (73%)
Frame = +1
Query: 154 KIKYLENEDYWNKNEYGPI 210
K+++++ WN++EYG +
Sbjct: 40 KLEWVDYNLQWNESEYGGV 58
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.4
Identities = 6/19 (31%), Positives = 14/19 (73%)
Frame = +1
Query: 154 KIKYLENEDYWNKNEYGPI 210
K+++++ WN++EYG +
Sbjct: 40 KLEWVDYNLQWNESEYGGV 58
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.4
Identities = 6/19 (31%), Positives = 14/19 (73%)
Frame = +1
Query: 154 KIKYLENEDYWNKNEYGPI 210
K+++++ WN++EYG +
Sbjct: 40 KLEWVDYNLQWNESEYGGV 58
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.4
Identities = 6/19 (31%), Positives = 14/19 (73%)
Frame = +1
Query: 154 KIKYLENEDYWNKNEYGPI 210
K+++++ WN++EYG +
Sbjct: 40 KLEWVDYNLQWNESEYGGV 58
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.4
Identities = 6/19 (31%), Positives = 14/19 (73%)
Frame = +1
Query: 154 KIKYLENEDYWNKNEYGPI 210
K+++++ WN++EYG +
Sbjct: 40 KLEWVDYNLQWNESEYGGV 58
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.4
Identities = 6/19 (31%), Positives = 14/19 (73%)
Frame = +1
Query: 154 KIKYLENEDYWNKNEYGPI 210
K+++++ WN++EYG +
Sbjct: 40 KLEWVDYNLQWNESEYGGV 58
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.4
Identities = 6/19 (31%), Positives = 14/19 (73%)
Frame = +1
Query: 154 KIKYLENEDYWNKNEYGPI 210
K+++++ WN++EYG +
Sbjct: 108 KLEWVDYNLQWNESEYGGV 126
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.4
Identities = 6/19 (31%), Positives = 14/19 (73%)
Frame = +1
Query: 154 KIKYLENEDYWNKNEYGPI 210
K+++++ WN++EYG +
Sbjct: 108 KLEWVDYNLQWNESEYGGV 126
>DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein
protein.
Length = 430
Score = 21.0 bits (42), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 54 NVSIRECEYSLFVSN*MV*SASRSFRLREE 143
N +I+ C Y+L + + R +RLR E
Sbjct: 153 NTTIQACPYTLNIFDLTSDKLLRQYRLRAE 182
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,368
Number of Sequences: 438
Number of extensions: 4452
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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