Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1004
         (448 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    66   4e-10
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2...    42   0.006
UniRef50_UPI00005A3928 Cluster: PREDICTED: hypothetical protein ...    33   2.8  
UniRef50_A5B2D1 Cluster: Putative uncharacterized protein; n=2; ...    32   4.9  
UniRef50_Q0TH67 Cluster: Putative TPR repeat protein; n=5; Esche...    31   8.6  
UniRef50_Q5KFE6 Cluster: Expressed protein; n=2; Filobasidiella ...    31   8.6  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 65.7 bits (153), Expect = 4e-10
 Identities = 24/43 (55%), Positives = 33/43 (76%)
 Frame = +3

Query: 36  RPSARWTDDLRRYAGRDWMRKAEDRALWRTMGEAYIQQWRDTG 164
           RP  RWTDDL + AG  WM+ A+DR+LW+++GEA++QQW   G
Sbjct: 455 RPPTRWTDDLVKVAGSTWMQAAQDRSLWKSLGEAFVQQWTSFG 497


>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
           F28E10.3 [imported] - Caenorhabditis elegans; n=4;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           protein F28E10.3 [imported] - Caenorhabditis elegans -
           Strongylocentrotus purpuratus
          Length = 824

 Score = 41.9 bits (94), Expect = 0.006
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +3

Query: 36  RPSARWTDDLRRYAGR-DWMRKAEDRALWRTMGEAYIQQWRDTG 164
           R   RW D+L+++ G+ +W ++A +R +W    EA+I QW D G
Sbjct: 394 RQRKRWRDELQQFWGQTNWHQQALNRGIWNHHAEAFILQWIDNG 437


>UniRef50_UPI00005A3928 Cluster: PREDICTED: hypothetical protein
           XP_855865; n=1; Canis lupus familiaris|Rep: PREDICTED:
           hypothetical protein XP_855865 - Canis familiaris
          Length = 346

 Score = 33.1 bits (72), Expect = 2.8
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 152 PLLDVGLSHSPPQCTILRLPHPISPSISPQVIG-PPGRGADT 30
           PLL VGL  +P  C+  RLP P +    P   G PP RG D+
Sbjct: 66  PLLPVGLRPTPTACS-ARLPRPEAHKARPAGRGVPPARGRDS 106


>UniRef50_A5B2D1 Cluster: Putative uncharacterized protein; n=2;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 737

 Score = 32.3 bits (70), Expect = 4.9
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 191 NATDT*SSSACISPLLDVGLSHSPPQCTILRLPHPISPSISPQVIG-PPGR 42
           ++T   SS A   P  + G+  SPPQC  L    P S S+ P ++  PP R
Sbjct: 296 SSTPQDSSQAPTIPSSEGGVPSSPPQCRYLTRRPPTSLSLEPSILHIPPKR 346


>UniRef50_Q0TH67 Cluster: Putative TPR repeat protein; n=5;
           Escherichia coli|Rep: Putative TPR repeat protein -
           Escherichia coli O6:K15:H31 (strain 536 / UPEC)
          Length = 649

 Score = 31.5 bits (68), Expect = 8.6
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 18  WSLLSVRPSARWTDDLRRYAGR-DWMRKAEDRALWRTMGEAYIQQWR 155
           W +L+++P A   D  RRYA      R  +D A W+ + +AY Q  R
Sbjct: 4   WEILALQPGAEERDIKRRYAQLVKNCRPEDDPAAWQQLHDAYEQALR 50


>UniRef50_Q5KFE6 Cluster: Expressed protein; n=2; Filobasidiella
           neoformans|Rep: Expressed protein - Cryptococcus
           neoformans (Filobasidiella neoformans)
          Length = 218

 Score = 31.5 bits (68), Expect = 8.6
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 128 HSPP-QCTILRLPHPISPSISPQVIGPPGRGAD 33
           HSP    ++LRL HP+ PS+SP     PG  A+
Sbjct: 69  HSPEIASSLLRLLHPLLPSLSPPYTSHPGLSAN 101


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 438,091,303
Number of Sequences: 1657284
Number of extensions: 8679226
Number of successful extensions: 25312
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25297
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23183027945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)