Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1004
         (448 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   2.3  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   2.3  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   4.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   5.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   5.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.0  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +1

Query: 73  MLGEIGCGRRRIVHCGGLWERPTSSNGEIQADD 171
           +LG +     ++V   G+W     +NG+   +D
Sbjct: 11  ILGIVSAATNKVVCYHGIWSTYRLNNGKFTVED 43


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 299 TKCYLTYSLHQCMDYLT 349
           T CY  Y  +  MDYL+
Sbjct: 250 TNCYNNYPYYSNMDYLS 266


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = -3

Query: 227 KYLSTF*KVIQLNATDT*SSSACISPLLDVGLSHSPPQCTILRLPHPISPSISPQVIGPP 48
           K  ST  +   ++ T+   + A  +P  +V  S +P +C    +PH +       V G P
Sbjct: 440 KSTSTTQRTTTVSTTEAPPAPAVSNPQNEVDGSVAPKECKQDFMPHELCDKYYRCVHGKP 499


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 65  AAICWERLDAEGGGSCIVADYGRGLHP 145
           A++C  +L  +G    ++A  G  +HP
Sbjct: 353 ASVCPAQLTIQGHDLTLIATDGEPVHP 379


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 65  AAICWERLDAEGGGSCIVADYGRGLHP 145
           A++C  +L  +G    ++A  G  +HP
Sbjct: 353 ASVCPAQLTIQGHDLTLIATDGEPVHP 379


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
 Frame = -1

Query: 232 NRNTYRLFEKLYN*M-----QRTLNH--HQPVSLHCW 143
           N N Y + EKLY  +     +  L H     V+L CW
Sbjct: 373 NPNVYEILEKLYKDLLELSDETELFHLGGDEVNLECW 409


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,965
Number of Sequences: 336
Number of extensions: 2155
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10090848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)