Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1004
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   4.0  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   7.0  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    25   7.0  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 417  FVCLNALINALRNYWSDLK 361
            + CL  L +++R+YWS++K
Sbjct: 1406 YQCLRHLSSSVRSYWSEVK 1424


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 101 RLPHPISPSISPQVIGPPGRGADT 30
           R P    P +   V+GPPG G  T
Sbjct: 66  RTPDEAPPPVIVAVMGPPGTGKST 89


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -3

Query: 173 SSSACISPLLDVGLSHSPPQCTILRLPHPISPSISPQVIG 54
           +S    S +LD         C    LP P SP+  PQV G
Sbjct: 289 ASLGSFSKVLDTYQFAEVVSCLEKTLPPPASPNSEPQVTG 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,301
Number of Sequences: 5004
Number of extensions: 33976
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)