Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1004
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0320 - 14316934-14318550 31 0.56
09_06_0026 + 20312364-20312687,20312780-20312950 30 0.74
06_03_0809 + 24814590-24816593 29 1.3
03_04_0029 - 16610182-16611753 29 1.7
10_08_0648 + 19579299-19580618 28 3.0
07_03_0186 + 14832933-14833484 28 3.0
04_03_0372 + 15068405-15070000 28 3.9
11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,570... 27 6.9
06_01_0601 + 4337575-4340149,4340566-4340978 27 6.9
03_01_0591 - 4366400-4366558,4366782-4366985,4367078-4367152,436... 27 6.9
12_01_1102 + 11622839-11623341,11623441-11623750 27 9.1
08_02_1011 - 23544917-23544964,23545334-23545822,23546661-235470... 27 9.1
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717... 27 9.1
01_01_0737 - 5747869-5748270 27 9.1
>04_03_0320 - 14316934-14318550
Length = 538
Score = 30.7 bits (66), Expect = 0.56
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -3
Query: 128 HSPPQCTILRLPHP-ISPSISPQVIGPPGRGA 36
++P + T+LR PHP S + P + PPGRGA
Sbjct: 153 NTPYRYTVLRPPHPRESVQLLPPLPPPPGRGA 184
>09_06_0026 + 20312364-20312687,20312780-20312950
Length = 164
Score = 30.3 bits (65), Expect = 0.74
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 49 GGPMTCGDMLGEIGCGRRRIVHCGG 123
GG G++ E+GCGRRR C G
Sbjct: 32 GGAGAMGEVTHEMGCGRRRDCRCDG 56
>06_03_0809 + 24814590-24816593
Length = 667
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 140 VGLSHSP-PQCTILRLPHPISPSISPQVIGPP 48
V L H P P T+L P P SP+ +P V PP
Sbjct: 235 VPLKHRPKPDVTVLPEPGPPSPAPAPAVSAPP 266
>03_04_0029 - 16610182-16611753
Length = 523
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 136 ASPIVRHNARSSAFRIQSLPAYRRKSSVHRAEGRT 32
ASP + A SS + S + +RKS HRA G T
Sbjct: 77 ASPSIASPAASSPSDVPSSSSKKRKSPAHRAPGHT 111
>10_08_0648 + 19579299-19580618
Length = 439
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 255 DEVVMLRSIEIPIDFL-KSYTIKCNGHLIIISLYLSIAGCRPLP*SATMHDP 103
D + L + P+ L +++ + C G L+++S++ +A +P P SA P
Sbjct: 273 DTLAGLGDEDYPLKCLVETHLVDCGGELLVVSMHDEVAYKKPSPESAVGRKP 324
>07_03_0186 + 14832933-14833484
Length = 183
Score = 28.3 bits (60), Expect = 3.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 77 WERLDAEGGGSCIVAD 124
W+R+D EGGG ++AD
Sbjct: 71 WQRIDGEGGGGGVLAD 86
>04_03_0372 + 15068405-15070000
Length = 531
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 128 HSPPQCTILRLPHP-ISPSISPQVIGPPGRGA 36
++P + T+LR PHP S + P + PPG GA
Sbjct: 151 NTPYRYTVLRPPHPRESVQLLPPLPPPPGGGA 182
>11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,
5709679-5709975
Length = 1214
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 161 CISPLLDVGLSHSPPQCTILRLPHPISPSISPQVIG 54
C SPL + L H P L++ + P+IS ++IG
Sbjct: 1114 CDSPLREWRLLHHLPALNYLKIQYFGDPTISAEIIG 1149
>06_01_0601 + 4337575-4340149,4340566-4340978
Length = 995
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 49 GGPMTCGDMLGEIGCGRRRIVH 114
G P CG + G C RRR VH
Sbjct: 568 GNPGLCGSIAGMARCDRRRHVH 589
>03_01_0591 -
4366400-4366558,4366782-4366985,4367078-4367152,
4367240-4367394,4367476-4367596,4367720-4367794,
4369435-4369572,4369655-4369765,4369844-4369948,
4370327-4370405,4370561-4370622,4370698-4370763,
4370840-4371024,4371095-4371173
Length = 537
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 210 LKSYTIKCNGHLIIISLYLSIAGCRPLP*SATMHDP 103
++ Y CN + ++ + GCR + + MHDP
Sbjct: 487 IRCYLFTCNSEFLTTQVWSFVKGCRDM--AREMHDP 520
>12_01_1102 + 11622839-11623341,11623441-11623750
Length = 270
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 48 RWTDDLRRYAGRDWMRKAEDRALWRTMGEAYIQQWRD 158
R D L +A R+W + WR M A +++WR+
Sbjct: 163 RLPDALAYWAIRNWNMDFKRAGEWRKMQIAELEEWRE 199
>08_02_1011 -
23544917-23544964,23545334-23545822,23546661-23547054,
23548707-23549104
Length = 442
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -2
Query: 108 DPPPSASNLSQ--HIAASHRSTGQ 43
DPPPSA++L+ HI RS GQ
Sbjct: 5 DPPPSAADLAPRIHIGMEWRSRGQ 28
>03_05_0062 +
20370608-20370977,20371062-20371541,20371661-20371731,
20371836-20371912,20372076-20372223,20372346-20372507,
20372743-20372940
Length = 501
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 155 SPLLDVGLSHSPPQCTILRLPHPISPSI 72
S L G S SPP T P P +PS+
Sbjct: 37 SSLTTAGTSQSPPDATTAGAPPPPAPSV 64
>01_01_0737 - 5747869-5748270
Length = 133
Score = 26.6 bits (56), Expect = 9.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 131 SHSPPQCTILRLPH 90
+H PP C I RLPH
Sbjct: 100 AHPPPPCAISRLPH 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,217,837
Number of Sequences: 37544
Number of extensions: 262771
Number of successful extensions: 862
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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