Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1004
         (448 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                28   3.1  
SB_59149| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)                 27   7.1  
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_7062| Best HMM Match : AMP-binding (HMM E-Value=1.4e-18)            27   9.3  

>SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 772

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 110 TILRLPHPISPSISPQVIGPPG 45
           ++ R P+P SPS +P +  PPG
Sbjct: 602 SVQRKPYPCSPSYTPSMRAPPG 623


>SB_59149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 282 QFCKPSSRKDEVVMLRSIEIPIDFLK 205
           +FC+P+S + E+    S EIP D +K
Sbjct: 297 RFCQPASNEQELYHQLSSEIPCDSIK 322


>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
          Length = 1421

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 167 SACISPLLDVGLSHSPPQCTIL--RLPH 90
           +AC   L+D GL+H+  QC ++   LPH
Sbjct: 916 TACQCRLMDTGLTHTACQCRLIDTGLPH 943


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 121 GLWERPTSSNGEIQAD 168
           G WE+P + NGEIQ D
Sbjct: 784 GPWEKPLTLNGEIQLD 799


>SB_7062| Best HMM Match : AMP-binding (HMM E-Value=1.4e-18)
          Length = 817

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
 Frame = -3

Query: 134 LSHSPPQCTILR-------LPHPISPSISPQVIGPPG 45
           LS+ PP+ +++        LPHP+S S  P    PPG
Sbjct: 651 LSNEPPKMSVIDGDKTTICLPHPVSASSVPPAEYPPG 687


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,504,673
Number of Sequences: 59808
Number of extensions: 268877
Number of successful extensions: 787
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)