Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1004
(448 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 28 2.7
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 3.6
U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protei... 28 3.6
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 28 3.6
U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protei... 27 4.7
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 27 6.2
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 27 6.2
AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi dom... 27 6.2
U97401-1|AAB52466.2| 336|Caenorhabditis elegans Hypothetical pr... 27 8.2
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 27 8.2
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -3
Query: 170 SSACISPLLDVGLSHSPPQC---TILRLPHPISPSISPQVIGP 51
SSA S + ++ + HS P T LPH +P SP++I P
Sbjct: 102 SSASPSAIPNITIFHSSPSSVFTTHSSLPHRYAPFTSPKIIAP 144
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 27.9 bits (59), Expect = 3.6
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 241 AKINRNTYRLFEKLYN*MQRTLNHHQPVSLHCWM*ASPIVRHNARSSAFRIQSLPAYRRK 62
A++N N + + + +T+N +P + CW+ P ++ R LPA+ R
Sbjct: 1403 ARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNIQLQFVKRGRR--PLPAHARF 1460
Query: 61 SSVHRAEGRTLNRDQ 17
S + RTL D+
Sbjct: 1461 SQGNLEIPRTLKSDE 1475
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 27.9 bits (59), Expect = 3.6
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 241 AKINRNTYRLFEKLYN*MQRTLNHHQPVSLHCWM*ASPIVRHNARSSAFRIQSLPAYRRK 62
A++N N + + + +T+N +P + CW+ P ++ R LPA+ R
Sbjct: 1496 ARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNIQLQFVKRGRR--PLPAHARF 1553
Query: 61 SSVHRAEGRTLNRDQ 17
S + RTL D+
Sbjct: 1554 SQGNLEIPRTLKSDE 1568
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 27.9 bits (59), Expect = 3.6
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 241 AKINRNTYRLFEKLYN*MQRTLNHHQPVSLHCWM*ASPIVRHNARSSAFRIQSLPAYRRK 62
A++N N + + + +T+N +P + CW+ P ++ R LPA+ R
Sbjct: 1496 ARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNIQLQFVKRGRR--PLPAHARF 1553
Query: 61 SSVHRAEGRTLNRDQ 17
S + RTL D+
Sbjct: 1554 SQGNLEIPRTLKSDE 1568
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 27.9 bits (59), Expect = 3.6
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 241 AKINRNTYRLFEKLYN*MQRTLNHHQPVSLHCWM*ASPIVRHNARSSAFRIQSLPAYRRK 62
A++N N + + + +T+N +P + CW+ P ++ R LPA+ R
Sbjct: 1496 ARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNIQLQFVKRGRR--PLPAHARF 1553
Query: 61 SSVHRAEGRTLNRDQ 17
S + RTL D+
Sbjct: 1554 SQGNLEIPRTLKSDE 1568
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 27.9 bits (59), Expect = 3.6
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 241 AKINRNTYRLFEKLYN*MQRTLNHHQPVSLHCWM*ASPIVRHNARSSAFRIQSLPAYRRK 62
A++N N + + + +T+N +P + CW+ P ++ R LPA+ R
Sbjct: 1403 ARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNIQLQFVKRGRR--PLPAHARF 1460
Query: 61 SSVHRAEGRTLNRDQ 17
S + RTL D+
Sbjct: 1461 SQGNLEIPRTLKSDE 1475
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 27.9 bits (59), Expect = 3.6
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 241 AKINRNTYRLFEKLYN*MQRTLNHHQPVSLHCWM*ASPIVRHNARSSAFRIQSLPAYRRK 62
A++N N + + + +T+N +P + CW+ P ++ R LPA+ R
Sbjct: 1496 ARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNIQLQFVKRGRR--PLPAHARF 1553
Query: 61 SSVHRAEGRTLNRDQ 17
S + RTL D+
Sbjct: 1554 SQGNLEIPRTLKSDE 1568
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 27.9 bits (59), Expect = 3.6
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 241 AKINRNTYRLFEKLYN*MQRTLNHHQPVSLHCWM*ASPIVRHNARSSAFRIQSLPAYRRK 62
A++N N + + + +T+N +P + CW+ P ++ R LPA+ R
Sbjct: 1496 ARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNIQLQFVKRGRR--PLPAHARF 1553
Query: 61 SSVHRAEGRTLNRDQ 17
S + RTL D+
Sbjct: 1554 SQGNLEIPRTLKSDE 1568
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 27.9 bits (59), Expect = 3.6
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 241 AKINRNTYRLFEKLYN*MQRTLNHHQPVSLHCWM*ASPIVRHNARSSAFRIQSLPAYRRK 62
A++N N + + + +T+N +P + CW+ P ++ R LPA+ R
Sbjct: 1496 ARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNIQLQFVKRGRR--PLPAHARF 1553
Query: 61 SSVHRAEGRTLNRDQ 17
S + RTL D+
Sbjct: 1554 SQGNLEIPRTLKSDE 1568
>U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protein
15, isoform a protein.
Length = 780
Score = 27.9 bits (59), Expect = 3.6
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -3
Query: 242 C*DQ*KYLSTF*KVIQLNATDT*SSSACISPLLDVGLSHSPPQCTILRL 96
C + +Y+ T KVI NA + S SA + +L HSPP CT L
Sbjct: 50 CMSKDEYMRTIAKVI--NAINCNSKSAAVPSVLQPSQFHSPP-CTTAAL 95
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 27.9 bits (59), Expect = 3.6
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 241 AKINRNTYRLFEKLYN*MQRTLNHHQPVSLHCWM*ASPIVRHNARSSAFRIQSLPAYRRK 62
A++N N + + + +T+N +P + CW+ P ++ R LPA+ R
Sbjct: 1495 ARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNIQLQFVKRGRR--PLPAHARF 1552
Query: 61 SSVHRAEGRTLNRDQ 17
S + RTL D+
Sbjct: 1553 SQGNLEIPRTLKSDE 1567
>U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protein
15, isoform b protein.
Length = 777
Score = 27.5 bits (58), Expect = 4.7
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -3
Query: 242 C*DQ*KYLSTF*KVIQLNATDT*SSSACISPLLDVGLSHSPPQCT 108
C + +Y+ T KVI NA + S SA + +L HSPP CT
Sbjct: 50 CMSKDEYMRTIAKVI--NAINCNSKSAAVPSVLQPSQFHSPP-CT 91
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 159 YLSIAGCRPLP*SATMHDPPPSASNLSQH 73
Y IAG LP + H PPP+ S++ H
Sbjct: 108 YTPIAGPSQLPPLQSAHIPPPAPSSIPPH 136
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 159 YLSIAGCRPLP*SATMHDPPPSASNLSQH 73
Y IAG LP + H PPP+ S++ H
Sbjct: 108 YTPIAGPSQLPPLQSAHIPPPAPSSIPPH 136
>AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi
domain-containing protein2 protein.
Length = 975
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 83 RLDAEGGGSCIVADYGRGLHPAMERY 160
R + EGGG+C VA Y + + RY
Sbjct: 387 RFELEGGGTCTVATYFKDKYKIQLRY 412
>U97401-1|AAB52466.2| 336|Caenorhabditis elegans Hypothetical
protein F21A9.2 protein.
Length = 336
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 138 RPLP*SATMHD-PPPSASNLSQHIAASHRST 49
R +P T D P S+S LS HI +SH++T
Sbjct: 265 RKVPEKCTKCDFVPTSSSQLSMHIRSSHQTT 295
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 95 PHPISPSISPQVIGPPGRG 39
P P++PS PQ GPP G
Sbjct: 107 PGPVNPSEDPQPSGPPSPG 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,018,301
Number of Sequences: 27780
Number of extensions: 203953
Number of successful extensions: 573
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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