Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1004
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   2.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   2.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   2.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.1  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 32  CPPLCPVDR*LAAICW 79
           CP  CP DR +  I W
Sbjct: 353 CPDCCPSDRMVYFITW 368


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 32  CPPLCPVDR*LAAICW 79
           CP  CP DR +  I W
Sbjct: 353 CPDCCPSDRMVYFITW 368


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 32  CPPLCPVDR*LAAICW 79
           CP  CP DR +  I W
Sbjct: 353 CPDCCPSDRMVYFITW 368


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 170 SSACISPLLDVGLSHSPPQCTILRLPHPISPSISPQVIG 54
           S+A +  +  VGLS +P Q  +  L   ++ S S  V+G
Sbjct: 160 STATVYVMSVVGLSKAPAQIPVDVLVLTVTLSASAMVLG 198


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 113 CTILRLPHPISPSISPQ 63
           C   +LPH   P +SPQ
Sbjct: 430 CLDGKLPHDDQPPLSPQ 446


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 105 PPPSASNLSQH 73
           PPPSA N+ Q+
Sbjct: 766 PPPSAQNVPQN 776


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,000
Number of Sequences: 438
Number of extensions: 2674
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)