Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1004
         (448 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08200.1 68418.m00959 peptidoglycan-binding LysM domain-conta...    28   2.5  
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr...    27   5.8  
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ...    27   7.6  
At1g12330.1 68414.m01425 expressed protein                             27   7.6  

>At5g08200.1 68418.m00959 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 409

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 125 SPPQCTILRLPHPISPSISPQVIGPPGRGADT 30
           SPP+  ILR+P P S S  P    PP  G+++
Sbjct: 42  SPPRSKILRIPSPTS-SPPPSSSSPPFHGSNS 72


>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 895

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
 Frame = +1

Query: 67  GDMLGEIGCGRRRIVHCGG-------LWERPTSSNGEIQADDD*VSVAFNCITFQK 213
           G +L E+ CGR  + H G        LW RP    G  +  DD +   F+  + +K
Sbjct: 796 GVVLLELICGREPLSHSGSPDSFNLVLWARPNLQAGAFEIVDDILKETFDPASMKK 851


>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
           PF00069: Protein kinase domain
          Length = 710

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = -3

Query: 182 DT*SSSACISPLLDVGLSHSPPQCTILRLPHPISPSISPQVIGPPGRGADT**RPITCSP 3
           DT S  +   P  D     SPP  +    P P  PS+ P V  PP   +     P+  SP
Sbjct: 21  DTSSDGSAAPPPTDSAPPPSPPADSS---PPPALPSLPPAVFSPPPTVSSPPPPPLDSSP 77


>At1g12330.1 68414.m01425 expressed protein
          Length = 505

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -2

Query: 225 IPIDFLKSYTIKCNGHLIIISLYLSIAGCRPLP*SATMHDPPPSASN 85
           +P++   + +   + +LII S++ S+    P P SAT   PP S+S+
Sbjct: 117 VPLESHNNPSFISSPNLIIKSIFQSLTRRSPKPSSATAALPPRSSSS 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,436,068
Number of Sequences: 28952
Number of extensions: 191809
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)