Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1003
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_23603| Best HMM Match : PH (HMM E-Value=1e-19)                      28   6.9  

>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 245 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 147
           M ++LV  M +RLV  M +RLV  M +RL   M
Sbjct: 858 MCTRLVNDMCTRLVNGMCTRLVNDMCTRLVNDM 890



 Score = 31.1 bits (67), Expect = 0.74
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 245 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 147
           M ++LV  M +RLV  M +RLV  M +RL   M
Sbjct: 874 MCTRLVNDMCTRLVNDMCTRLVNGMCTRLVNDM 906



 Score = 31.1 bits (67), Expect = 0.74
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 245 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 147
           M ++LV  M +RLV  M +RLV  M +RL   M
Sbjct: 882 MCTRLVNDMCTRLVNGMCTRLVNDMCTRLVNDM 914



 Score = 31.1 bits (67), Expect = 0.74
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 245 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 147
           M ++LV  M +RLV  M +RLV  M +RL   M
Sbjct: 898 MCTRLVNDMCTRLVNDMCTRLVNGMCTRLVNGM 930



 Score = 31.1 bits (67), Expect = 0.74
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 245  MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 147
            M ++LV  M +RLV  M +RLV  M +RL   M
Sbjct: 906  MCTRLVNDMCTRLVNGMCTRLVNGMCTRLVSDM 938



 Score = 31.1 bits (67), Expect = 0.74
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 245  MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 147
            M ++LV  M +RLV  M +RLV  M +RL   M
Sbjct: 954  MCTRLVNDMCTRLVNDMCTRLVNDMCTRLVNDM 986



 Score = 30.7 bits (66), Expect = 0.97
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 245 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 147
           M ++LV  M +RLV  M +RLV  M +RL   M
Sbjct: 866 MCTRLVNGMCTRLVNDMCTRLVNDMCTRLVNGM 898



 Score = 30.7 bits (66), Expect = 0.97
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 245 MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 147
           M ++LV  M +RLV  M +RLV  M +RL   M
Sbjct: 890 MCTRLVNGMCTRLVNDMCTRLVNDMCTRLVNGM 922



 Score = 30.7 bits (66), Expect = 0.97
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 245  MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 147
            M ++LV  M +RLV  M +RLV  M +RL   M
Sbjct: 914  MCTRLVNGMCTRLVNGMCTRLVSDMCTRLVNDM 946



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 245  MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 147
            M ++LV  M +RLV  M +RLV  M +RL   M
Sbjct: 946  MCTQLVNGMCTRLVNDMCTRLVNDMCTRLVNDM 978



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 242 PSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 147
           P  +V  M +RLV  M +RLV  M +RL   M
Sbjct: 851 PCTVVNDMCTRLVNDMCTRLVNGMCTRLVNDM 882



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 245  MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 147
            M ++LV  M +RLV  M +RLV  M ++L   M
Sbjct: 962  MCTRLVNDMCTRLVNDMCTRLVNDMCTQLVNGM 994



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 245  MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 147
            M ++LV  M +RLV  M +RLV  M ++L   M
Sbjct: 922  MCTRLVNGMCTRLVSDMCTRLVNDMCTQLVNGM 954



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 245  MPSKLVRHMLSRLVQSMLSRLVQSMLSRLAQSM 147
            M ++LV  M +RLV  M +RLV  M +RL   +
Sbjct: 986  MCTQLVNGMCTRLVNDMCTRLVNDMCTRLVNDV 1018


>SB_23603| Best HMM Match : PH (HMM E-Value=1e-19)
          Length = 274

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 288 QELLRPCRRRLSTHR*GRCTRSILR 362
           +E+L+ CRRRLS+   G CT   +R
Sbjct: 227 KEVLQKCRRRLSSSNRGSCTFEEIR 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,772,095
Number of Sequences: 59808
Number of extensions: 168959
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)