Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1003
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43270.3 68418.m05289 squamosa promoter-binding protein-like ...    29   3.2  
At5g43270.2 68418.m05288 squamosa promoter-binding protein-like ...    29   3.2  
At5g43270.1 68418.m05287 squamosa promoter-binding protein-like ...    29   3.2  
At1g52855.1 68414.m05976 expressed protein                             28   5.6  
At5g26642.1 68418.m03156 reverse transcriptase-related low simil...    27   7.4  

>At5g43270.3 68418.m05289 squamosa promoter-binding protein-like 2
           (SPL2) identical to squamosa promoter binding
           protein-like 2 [Arabidopsis thaliana] GI:5931645;
           contains Pfam profile PF03110: SBP domain
          Length = 419

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 240 RHMLQFLFNLRCVSRLQELLRPCRRRLSTH 329
           R   Q      C+S   E  R CRRRLS H
Sbjct: 207 RRFCQQCSRFHCLSEFDEKKRSCRRRLSDH 236


>At5g43270.2 68418.m05288 squamosa promoter-binding protein-like 2
           (SPL2) identical to squamosa promoter binding
           protein-like 2 [Arabidopsis thaliana] GI:5931645;
           contains Pfam profile PF03110: SBP domain
          Length = 419

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 240 RHMLQFLFNLRCVSRLQELLRPCRRRLSTH 329
           R   Q      C+S   E  R CRRRLS H
Sbjct: 207 RRFCQQCSRFHCLSEFDEKKRSCRRRLSDH 236


>At5g43270.1 68418.m05287 squamosa promoter-binding protein-like 2
           (SPL2) identical to squamosa promoter binding
           protein-like 2 [Arabidopsis thaliana] GI:5931645;
           contains Pfam profile PF03110: SBP domain
          Length = 419

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 240 RHMLQFLFNLRCVSRLQELLRPCRRRLSTH 329
           R   Q      C+S   E  R CRRRLS H
Sbjct: 207 RRFCQQCSRFHCLSEFDEKKRSCRRRLSDH 236


>At1g52855.1 68414.m05976 expressed protein
          Length = 68

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 498 CGISCEWCSMRSISCNRCGSGVSRYR 421
           C I   W S R++ C+ CGS +  YR
Sbjct: 43  CFIPIYWRSWRAVVCSFCGSVLKSYR 68


>At5g26642.1 68418.m03156 reverse transcriptase-related low
           similarity to reverse transcriptase [Arabidopsis
           thaliana] GI:976278
          Length = 411

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 578 AAYVFSPPKDRHGHRLCKGGVSN 510
           A Y FS P D H + LC+ G+S+
Sbjct: 372 ANYAFSLPSDLHFYDLCRDGLSS 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,553,387
Number of Sequences: 28952
Number of extensions: 110657
Number of successful extensions: 302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)