Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1002
         (618 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8ITJ9 Cluster: Transposase; n=7; Arthropoda|Rep: Trans...   105   6e-22
UniRef50_Q61X57 Cluster: Putative uncharacterized protein CBG041...    54   2e-06
UniRef50_Q9TXP4 Cluster: Putative uncharacterized protein; n=1; ...    49   1e-04
UniRef50_A0NEM1 Cluster: ENSANGP00000030266; n=1; Anopheles gamb...    34   3.1  

>UniRef50_Q8ITJ9 Cluster: Transposase; n=7; Arthropoda|Rep:
           Transposase - Bombyx mori (Silk moth)
          Length = 346

 Score =  105 bits (253), Expect = 6e-22
 Identities = 48/52 (92%), Positives = 49/52 (94%)
 Frame = -3

Query: 520 KGMLKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGYFE 365
           K   KPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGG+FE
Sbjct: 295 KACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGHFE 346



 Score = 68.9 bits (161), Expect = 9e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%)
 Frame = -1

Query: 600 FIRHEN*PSSSPDLNPLDYKIWQHLEEKACSSLIP 496
           FIRHE+ PSSSPDLNPLDYKIWQHLEEKACS   P
Sbjct: 268 FIRHEDWPSSSPDLNPLDYKIWQHLEEKACSKPHP 302


>UniRef50_Q61X57 Cluster: Putative uncharacterized protein CBG04119;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG04119 - Caenorhabditis
           briggsae
          Length = 312

 Score = 54.4 bits (125), Expect = 2e-06
 Identities = 25/52 (48%), Positives = 34/52 (65%)
 Frame = -3

Query: 520 KGMLKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGYFE 365
           K M + HPN++SLK +L+KA  D+D D +R  +   P RLKACI+  G  FE
Sbjct: 258 KVMARSHPNVDSLKAALLKAWDDLDDDYLRRTVASVPARLKACIKAEGSNFE 309



 Score = 41.5 bits (93), Expect = 0.016
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = -1

Query: 579 PSSSPDLNPLDYKIWQHLEEKACSSLIP 496
           P+SSPDLNPLD+ +W +LEEK  +   P
Sbjct: 238 PASSPDLNPLDFSVWGYLEEKVMARSHP 265


>UniRef50_Q9TXP4 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 459

 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 22/47 (46%), Positives = 33/47 (70%)
 Frame = -3

Query: 535 ATLGGKGMLKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKA 395
           + L  K   KPH N++SLK SL KA  ++D++ +RA +D +PRRL+A
Sbjct: 353 SVLEAKACSKPHRNIDSLKDSLKKAWDELDINYLRATVDSFPRRLEA 399



 Score = 46.0 bits (104), Expect = 7e-04
 Identities = 19/31 (61%), Positives = 21/31 (67%)
 Frame = -1

Query: 600 FIRHEN*PSSSPDLNPLDYKIWQHLEEKACS 508
           FI     P SSPDLNP+DY +W  LE KACS
Sbjct: 331 FIAFNQWPPSSPDLNPMDYSVWSVLEAKACS 361


>UniRef50_A0NEM1 Cluster: ENSANGP00000030266; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000030266 - Anopheles gambiae
           str. PEST
          Length = 213

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -1

Query: 579 PSSSPDLNPLDYKIWQHL 526
           P+ SPDLNPLDY IW ++
Sbjct: 140 PALSPDLNPLDYSIWGYM 157


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,888,924
Number of Sequences: 1657284
Number of extensions: 10538251
Number of successful extensions: 20615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20614
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)