Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1002
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_49079| Best HMM Match : DUF1393 (HMM E-Value=5.8)                   29   4.0  
SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 493 LESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGYFE 365
           +E LKT++      I  +     I ++ RR++ C+Q +GG+ E
Sbjct: 115 IEKLKTAITAKINAIPKEECIKVIQNFARRVQVCLQRNGGHLE 157


>SB_49079| Best HMM Match : DUF1393 (HMM E-Value=5.8)
          Length = 299

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 579 PSSSPDLNPLDYKIWQHLEEKACSSLI 499
           PSS+PD   +D+ +W  LEE+  + ++
Sbjct: 83  PSSNPDSPIVDFDLWSELEEEVLNYVV 109


>SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 505 PHPN-LESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGYFE*TLV 353
           P P  + SLK+   KA  ++ +  +       P+RLK  I+  GG+   TL+
Sbjct: 216 PQPRTMTSLKSRFKKAWRNVSLSTLSELSHSMPQRLKNVIKAKGGHANYTLI 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,036,122
Number of Sequences: 59808
Number of extensions: 327093
Number of successful extensions: 926
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)