Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1002
(618 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical ... 49 3e-06
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 31 0.87
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 31 0.87
U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 31 0.87
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 31 0.87
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 31 0.87
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 31 0.87
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 30 1.2
AF038612-2|AAB92044.1| 507|Caenorhabditis elegans Hypothetical ... 30 1.5
U41540-2|AAK39230.1| 444|Caenorhabditis elegans Suppressor/enha... 29 3.5
U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protei... 29 3.5
AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin SE... 29 3.5
>AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical
protein H28G03.4 protein.
Length = 459
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = -3
Query: 535 ATLGGKGMLKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKA 395
+ L K KPH N++SLK SL KA ++D++ +RA +D +PRRL+A
Sbjct: 353 SVLEAKACSKPHRNIDSLKDSLKKAWDELDINYLRATVDSFPRRLEA 399
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -1
Query: 600 FIRHEN*PSSSPDLNPLDYKIWQHLEEKACS 508
FI P SSPDLNP+DY +W LE KACS
Sbjct: 331 FIAFNQWPPSSPDLNPMDYSVWSVLEAKACS 361
Score = 31.1 bits (67), Expect = 0.66
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -3
Query: 454 DIDMDLVRAAIDDWPRRLKACIQNHGGYFE 365
++++ +RA +D +P+R++ CI+ G FE
Sbjct: 419 ELEIPYLRATVDAFPKRVRVCIEADGDIFE 448
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 579 PSSSPDLNPLDYKIWQHLEEK 517
PS SPDLNP+++ +W+ LE +
Sbjct: 202 PSQSPDLNPIEH-LWEELERR 221
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 579 PSSSPDLNPLDYKIWQHLEEK 517
PS SPDLNP+++ +W+ LE +
Sbjct: 243 PSQSPDLNPIEH-LWEELERR 262
>U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical
protein F18C5.7 protein.
Length = 343
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 579 PSSSPDLNPLDYKIWQHLEEK 517
PS SPDLNP+++ +W+ LE +
Sbjct: 272 PSQSPDLNPIEH-LWEELERR 291
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 579 PSSSPDLNPLDYKIWQHLEEK 517
PS SPDLNP+++ +W+ LE +
Sbjct: 202 PSQSPDLNPIEH-LWEELERR 221
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 579 PSSSPDLNPLDYKIWQHLEEK 517
PS SPDLNP+++ +W+ LE +
Sbjct: 202 PSQSPDLNPIEH-LWEELERR 221
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 579 PSSSPDLNPLDYKIWQHLEEK 517
PS SPDLNP+++ +W+ LE +
Sbjct: 272 PSQSPDLNPIEH-LWEELERR 291
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 579 PSSSPDLNPLDYKIWQHLEEK 517
PS SPDLNP+++ +W+ LE +
Sbjct: 272 PSQSPDLNPIEH-LWEKLERR 291
>AF038612-2|AAB92044.1| 507|Caenorhabditis elegans Hypothetical
protein F13B6.2 protein.
Length = 507
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 493 LESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGYFE 365
+ SLK +L A ++D++ +RA +D P+ L GYF+
Sbjct: 1 MNSLKIALTAAWDNLDVNYLRAVVDSHPKGLWPLSNQKEGYFK 43
>U41540-2|AAK39230.1| 444|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein12 protein.
Length = 444
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -3
Query: 235 YVYEYNKKLRG-VMVSKYLLLFIFRTI 158
Y Y++ K + G ++VS +LLLF+F TI
Sbjct: 123 YKYKFYKLIHGWLIVSSFLLLFLFTTI 149
>U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protein
protein.
Length = 461
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -3
Query: 235 YVYEYNKKLRG-VMVSKYLLLFIFRTI 158
Y Y++ K + G ++VS +LLLF+F TI
Sbjct: 123 YKYKFYKLIHGWLIVSSFLLLFLFTTI 149
>AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin
SEL-12 protein.
Length = 444
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -3
Query: 235 YVYEYNKKLRG-VMVSKYLLLFIFRTI 158
Y Y++ K + G ++VS +LLLF+F TI
Sbjct: 123 YKYKFYKLIHGWLIVSSFLLLFLFTTI 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,509,405
Number of Sequences: 27780
Number of extensions: 255050
Number of successful extensions: 457
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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