Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1001
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.6  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.7  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    22   3.7  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   8.4  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   8.4  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 40   NNDYTYLFDFSSYGMDEGTRKTVK 111
            N+D  YLF+   +G +EG    +K
Sbjct: 1039 NSDKPYLFETVEFGREEGKEHHLK 1062


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 317 HVNCLMKYIQRTVHVFQSMFNFNQVTSVMSNMPQ 216
           + NC+M  +  +V +   + N++  T+ +  MPQ
Sbjct: 277 YFNCIMFMVASSVVLTVVVLNYHHRTADIHEMPQ 310


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 317 HVNCLMKYIQRTVHVFQSMFNFNQVTSVMSNMPQ 216
           + NC+M  +  +V +   + N++  T+ +  MPQ
Sbjct: 277 YFNCIMFMVASSVVLTVVVLNYHHRTADIHEMPQ 310


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 317 HVNCLMKYIQRTVHVFQSMFNFNQVTSVMSNMPQ 216
           + NC+M  +  +V +   + N++  T+ +  MPQ
Sbjct: 277 YFNCIMFMVASSVVLTVVVLNYHHRTADIHEMPQ 310


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 317 HVNCLMKYIQRTVHVFQSMFNFNQVTSVMSNMPQ 216
           + NC+M  +  +V +   + N++  T+ +  MPQ
Sbjct: 277 YFNCIMFMVASSVVLTVVVLNYHHRTADIHEMPQ 310


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 317 HVNCLMKYIQRTVHVFQSMFNFNQVTSVMSNMPQ 216
           + NC+M  +  +V +   + N++  T+ +  MPQ
Sbjct: 277 YFNCIMFMVASSVVLTVVVLNYHHRTADIHEMPQ 310


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 15/76 (19%), Positives = 32/76 (42%)
 Frame = +1

Query: 25  LYVNINNDYTYLFDFSSYGMDEGTRKTVKELHDEAEAYWFGVRNLQRSLRLSVKLGLRFL 204
           L+   N   T L   +  G+   ++K V   ++  + +    +  +  LRL+ ++     
Sbjct: 262 LFALFNTFGTILLIMTCSGVHSESQKLVGVCYEYQDRFSDESKKRRELLRLAQQVNANIA 321

Query: 205 DVLDCGIFDITDVTWL 252
            +     FDI+  T+L
Sbjct: 322 QITAANFFDISRSTFL 337


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 374 DCDRRQACCVSFAHDNSRDH 315
           DCD+ Q    ++ H+N   H
Sbjct: 28  DCDKNQNTEQNYTHNNEMYH 47


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 374 DCDRRQACCVSFAHDNSRDH 315
           DCD+ Q    ++ H+N   H
Sbjct: 28  DCDKNQNTEQNYTHNNEMYH 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,465
Number of Sequences: 336
Number of extensions: 2794
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)