Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1001
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   1.7  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    25   6.8  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   9.0  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 148 LQTSKLRLHHEAPSQFSAYLRPFRSSRNRINTCNHC 41
           LQ S+L  H EA    +     F  SR R+N  N+C
Sbjct: 603 LQESELASHAEAEINITYKFDNFSESRPRLNILNNC 638


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 348 ATSLPPITVEALGIIIPKVPQLIVDAVKLVVHGETDVEP 464
           A S  P+T E L     KV  L +D   L  HGET +EP
Sbjct: 82  AMSFAPVTQELLSNSDNKVGFLALD---LRAHGETTLEP 117


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -3

Query: 440 HNEFDGVNNQLWHFRYDDSKSFD 372
           H  FD  + + W F  DD   +D
Sbjct: 177 HLRFDSTDKEFWDFSIDDFAQYD 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,057
Number of Sequences: 5004
Number of extensions: 46927
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)