Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1001
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0132 + 16469922-16470145,16472720-16472793,16473613-164737...    30   1.7  
05_03_0340 + 12691974-12692155,12692248-12692312,12692816-126928...    29   4.0  
01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833...    29   4.0  
09_04_0669 + 19335661-19335917,19336153-19336279,19336393-193367...    27   9.2  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    27   9.2  

>01_04_0132 +
           16469922-16470145,16472720-16472793,16473613-16473755,
           16474076-16474187,16475235-16475350,16475448-16475594
          Length = 271

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
 Frame = +3

Query: 201 LGRFRLWHIRHN*RNLVEIKHTLKNVNGPLNVFHET--IDVVSAIIMGKAYATSLPPITV 374
           LGR R W+ R +      + H  KN +   +VF     I + +A  +   YA  L P  V
Sbjct: 71  LGRQRYWNSRLSTERQRLVDHVFKNSDVVCDVFSGVGPIAISAARKVKYVYANDLNPTAV 130

Query: 375 EAL--GIIIPKVPQLI----VDAVKLV--VHGETDVEPIISIMNGAP 491
           E L   I++ K+ + I    +DA + +  ++    V P+  ++   P
Sbjct: 131 EYLERNIVLNKLERKIEVFNMDARRFISSIYSSQHVHPVTQVVMNLP 177


>05_03_0340 +
           12691974-12692155,12692248-12692312,12692816-12692861,
           12692959-12693057,12693722-12693755,12694489-12694618,
           12694795-12694855,12695495-12695591,12696843-12697022,
           12697120-12697233,12697283-12697396
          Length = 373

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 481 FIMLIIGSTSVSPCTTSLTASTINCGTLGMMIPRASTVIGG 359
           FI+ I G+TSV  C T+ TA+ +    LGM I      +GG
Sbjct: 315 FILFIRGATSVKDCLTTATAAEL----LGMCIAEWLQRLGG 351


>01_01_1054 +
           8330081-8330137,8330229-8330321,8330445-8330504,
           8330703-8330975,8331107-8331181,8331269-8331325,
           8331409-8331549,8331656-8331706,8331795-8331944,
           8331974-8332057,8332171-8332273,8332451-8332527,
           8333469-8333704,8334000-8334078,8335123-8335218,
           8335735-8335828,8336325-8336423,8336663-8337453
          Length = 871

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 306 TIDVVSAIIMGKAYATSLPPITVEALGIIIPKVPQLIVDAVKLVVH 443
           ++ ++SAI+  + +   LPP  V+ +  ++   P L   AV+ +VH
Sbjct: 308 SVVILSAIVQYQVFHKRLPPEAVDLVSRLLQYSPNLRCTAVEALVH 353


>09_04_0669 +
           19335661-19335917,19336153-19336279,19336393-19336771,
           19336857-19336915,19337413-19337449,19337629-19337996,
           19338493-19338543
          Length = 425

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -3

Query: 446 AVHNEFDGVNNQLWHFRYDDSKSFDCDRRQACCVSFAHDNSRDHVNCLMKYIQR 285
           A+ +      ++LW   +  +   D D R AC  +  H  S+DH+N +  ++Q+
Sbjct: 56  ALRHPSSAARSRLW-CPFCSADLVDLDSRFACSNAIYHLASQDHLNGVKAFLQK 108


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 445 PCTTSLTASTINCGTLGMMIPRASTVIGGKL 353
           PC T +T  T++ G LG+ +P++ +   GKL
Sbjct: 271 PCLTEVTKITLSLGFLGLSLPQSGSF--GKL 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,263,062
Number of Sequences: 37544
Number of extensions: 286000
Number of successful extensions: 742
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)