Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1001
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6) 31 0.58
SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0) 30 1.8
SB_56338| Best HMM Match : DUF970 (HMM E-Value=1.9) 29 3.1
SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1) 29 4.1
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_24093| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-13) 28 7.1
SB_2626| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_41827| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_40784| Best HMM Match : TGF_beta (HMM E-Value=6.40393e-43) 27 9.4
SB_36150| Best HMM Match : DUF594 (HMM E-Value=5.5) 27 9.4
SB_13239| Best HMM Match : DUF594 (HMM E-Value=5.1) 27 9.4
SB_42749| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 27 9.4
SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1) 27 9.4
>SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6)
Length = 302
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +3
Query: 309 IDVVSAIIMGKAYATSLPPITVEALGIIIPKVPQLIVDAVKLVVHGETDVEPIISIMNG 485
+DVV I+ G L + +G+++ V ++VD V L+V+G V+ ++ I+NG
Sbjct: 39 VDVVLLIVNGVVVDVVLLIVNGVVVGVVLLIVNGVVVDVVLLIVNGVV-VDVVLLIVNG 96
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +3
Query: 306 TIDVVSAIIMGKAYATSLPPITVEALGIIIPKVPQLIVDAVKLVVHGETDVEPIISIMNG 485
T+DVV I+ G L + + +++ V ++VD V L+V+G V+ ++ I+NG
Sbjct: 2 TVDVVLLIVNGVVVDVVLLIVNGVVVDVVLLIVNGVVVDVVLLIVNGVV-VDVVLLIVNG 60
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +3
Query: 309 IDVVSAIIMGKAYATSLPPITVEALGIIIPKVPQLIVDAVKLVVHGETDVEPIISIMNG 485
+DVV I+ G L + + +++ V ++VD V L+ +G V+ I+ I+NG
Sbjct: 75 VDVVLLIVNGVVVDVVLLIVNGVVVDVVLLIVNGVVVDVVLLIANGVV-VDVILLIVNG 132
>SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 272 FQSMFNFNQVTSVMSNMPQSKTSKNRRPSFTLKRKLLCKFLTP 144
F + F Q + + P S+TS N RP+ ++K L K TP
Sbjct: 62 FLARFKAMQQNTNKNTTPSSQTSSNNRPALSIKMSTLRKPTTP 104
>SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1885
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -3
Query: 491 WCAIHYAYYWFYICFAVHNEFDGVNNQLWHFRYDDSKSF-DC--DRRQACCVSFA 336
W AI+Y Y I F + N F G + F+ + + F DC D+ Q CV FA
Sbjct: 1158 WVAIYYVIYIIIIAFFMINIFVGF--VIVTFQNEGEEEFKDCELDKNQRKCVEFA 1210
>SB_56338| Best HMM Match : DUF970 (HMM E-Value=1.9)
Length = 554
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +3
Query: 291 NVFHETIDVVSAIIMGKAYATSLPPITVEALGIIIPKVPQLIVDAVKLVVHGETDVE 461
+V T ++ ++ + +S P I + I+ +P + V ++V GETDVE
Sbjct: 47 SVGDRTYSLIKSLCQPRTQVSSAPAIFQRTIDSILRDIPGVAVYMDDILVTGETDVE 103
>SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)
Length = 355
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Frame = -1
Query: 475 MLIIGSTSVSPCTTSLTASTINCGT-----LGMMIPRASTVIGGKLVA*ALPMIIAETTS 311
+L+ G+T P +T + + CGT L + I +A ++ G ++ LP+ I +
Sbjct: 132 VLLCGTTISQPLPLFITQAVLLCGTTILQPLTLFITQA-VLLCGTTISQPLPLFITQAVL 190
Query: 310 IVS*NTFRGPFTFFRVCLISTKLRQLCRICH 218
+ T P + L Q C +CH
Sbjct: 191 LCG-TTISQPLSILHKLCYCVAL-QYCSLCH 219
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 252 EIKHTLKNVNGPLNVFHETID--VVSAIIMGKAYATS 356
++KH + VNG L+VF E D V+S ++ +A+S
Sbjct: 208 KLKHVIDEVNGLLSVFSEGADDLVISPLLGNVCFASS 244
>SB_24093| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-13)
Length = 305
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 506 GAWPSWCAIHYAYYWFYI-CFAVHNEFDGVN 417
GA PSW IH A+Y F + FAV + F VN
Sbjct: 83 GALPSW-RIHDAFYIFVLPSFAVFSSFLSVN 112
>SB_2626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 506 GAWPSWCAIHYAYYWFYI-CFAVHNEFDGVN 417
GA PSW IH A+Y F + FAV + F VN
Sbjct: 83 GALPSW-RIHDAFYIFVLPSFAVFSSFLSVN 112
>SB_41827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 470 YYWFYICFAVHNEFDGVNNQLWHFRYDDSKS 378
Y+ +YI +AV E+D N Q ++Y ++ S
Sbjct: 383 YFSYYIMYAVTKEYDYPNGQKLMYKYHEAFS 413
>SB_40784| Best HMM Match : TGF_beta (HMM E-Value=6.40393e-43)
Length = 1402
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 279 NGPLNVFHETIDVVSAIIMGKAYATSLPPITVEALGIIIPKVP 407
NG L + I + S + K ATS PP+ V++L ++ P
Sbjct: 553 NGTLPALQQPIVLQSMMGTPKETATSQPPVPVKSLSTMLQSTP 595
>SB_36150| Best HMM Match : DUF594 (HMM E-Value=5.5)
Length = 115
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 459 EPIISIMNGAPTWPCSKQVWQTY 527
EP+ NG +W KQ+WQ Y
Sbjct: 31 EPVKLAKNGVESWKIWKQLWQHY 53
>SB_13239| Best HMM Match : DUF594 (HMM E-Value=5.1)
Length = 125
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 459 EPIISIMNGAPTWPCSKQVWQTY 527
EP+ NG +W KQ+WQ Y
Sbjct: 31 EPVKLAKNGVESWKIWKQLWQHY 53
>SB_42749| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
Length = 401
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 459 EPIISIMNGAPTWPCSKQVWQTY 527
EP+ NG +W KQ+WQ Y
Sbjct: 28 EPVKLAKNGVESWKIWKQLWQHY 50
>SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)
Length = 570
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Frame = -1
Query: 475 MLIIGSTSVSPCTTSLTASTINCG-TLGMMIP---RASTVIGGKLVA*ALPMIIAETTSI 308
+L+ G+T + P +T + + CG T+ +P + ++ G ++ LP+ I + +
Sbjct: 75 VLLCGTTILQPLPLFITQAVLLCGTTISQPLPLFITQAVLLCGTTISQPLPLFITQAVLL 134
Query: 307 VS*NTFRGPFTFF---RVCLISTKLRQLCRICHNL 212
T P F V L T + Q + H L
Sbjct: 135 CG-TTISQPLPLFITQAVLLCGTTISQPLPLLHKL 168
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,006,930
Number of Sequences: 59808
Number of extensions: 351887
Number of successful extensions: 1153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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