Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1001
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical...    28   6.3  
Z81493-8|CAB04043.1|  305|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AC006629-11|ABC48256.1|  312|Caenorhabditis elegans Hypothetical...    27   8.3  

>AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical
           protein T02H6.2 protein.
          Length = 665

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/65 (21%), Positives = 32/65 (49%)
 Frame = -3

Query: 332 DNSRDHVNCLMKYIQRTVHVFQSMFNFNQVTSVMSNMPQSKTSKNRRPSFTLKRKLLCKF 153
           D   D    + ++++R  +++ +  NFN+    + N  + +    ++   +LKRKL    
Sbjct: 499 DTKTDPTTNIKEFLER--NMYNAAKNFNEFKESIENREKKEAEARKKVEESLKRKLDSSK 556

Query: 152 LTPNQ 138
           + P+Q
Sbjct: 557 VKPSQ 561


>Z81493-8|CAB04043.1|  305|Caenorhabditis elegans Hypothetical
           protein F01D5.8 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 28  YVNINNDYTYLFDFSSYGMDEGTR 99
           Y N+     Y FD+S YG   GT+
Sbjct: 104 YANVFETDLYAFDYSGYGFSSGTQ 127


>AC006629-11|ABC48256.1|  312|Caenorhabditis elegans Hypothetical
           protein F12E12.7 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 458 YICFAVHNEFDGVNNQLWHFRYDDSKSFDCDRR 360
           ++CF VH +FD +N  L    Y    S + DRR
Sbjct: 246 HVCFPVHRDFD-LNIILKEIEYQPVSSDELDRR 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,360,811
Number of Sequences: 27780
Number of extensions: 259501
Number of successful extensions: 874
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)