Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1001
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   3.2  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   4.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.3  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   4.3  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.8  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 252 EIKHTLKNVNGPLNVFHETIDVV 320
           +I+H LKN+  PL  F  T+D V
Sbjct: 1   QIQH-LKNIMKPLMEFSATLDTV 22


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 272 FQSMFNFNQVTSVMSNMPQSKTSKNRRPSFTLKR 171
           F S  NF +   V+ +     T    RPSF L +
Sbjct: 8   FVSQNNFEEFAKVLGDQNLVNTVLQPRPSFELSK 41


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 502 HGQVGAPFIMLIIGSTSVSPCTTSLTASTINCGTLGMMIPRASTVIGG 359
           H Q+G P       +T+ +P + SL AS  + G   +    +ST  GG
Sbjct: 217 HAQMGRPSYTTATMATTSTPGSGSLPASPADSGVSDV---ESSTSSGG 261


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 272 FQSMFNFNQVTSVMSNMPQSKTSKNRRPSFTLKR 171
           F S  NF +   V+ +     T    RPSF L +
Sbjct: 10  FVSQNNFEEFAKVLGDQNLVNTVLQPRPSFELSK 43


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +1

Query: 1   KLINGIKKLYVNINNDYTYLFDFSSY 78
           K+I+ +    ++ NN+Y Y ++ ++Y
Sbjct: 80  KIISSLSNRTIHNNNNYKYNYNNNNY 105


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +1

Query: 1   KLINGIKKLYVNINNDYTYLFDFSSY 78
           K+I+ +    ++ NN+Y Y ++ ++Y
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNY 105


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +1

Query: 1   KLINGIKKLYVNINNDYTYLFDFSSY 78
           K+I+ +    ++ NN+Y Y ++ ++Y
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNY 105


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +1

Query: 1   KLINGIKKLYVNINNDYTYLFDFSSY 78
           K+I+ +    ++ NN+Y Y ++ ++Y
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNY 105


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +1

Query: 1   KLINGIKKLYVNINNDYTYLFDFSSY 78
           K+I+ +    ++ NN+Y Y ++ ++Y
Sbjct: 313 KIISSLSNKTIHNNNNYKYNYNNNNY 338


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +1

Query: 331 SWAKLTQQACRRSQSKLLESSYLKC 405
           SW     Q C  S S    +S  KC
Sbjct: 354 SWVTRESQICNNSSSDKERNSSFKC 378


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 285  PLNVFHETIDVVSAIIMGKAYATSLPPITVEALGI 389
            P+N FH T+   S  +  +   T+L P +V  L +
Sbjct: 1538 PINEFHWTLVSNSVKMQRRFVVTNLQPSSVYQLKV 1572


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 285  PLNVFHETIDVVSAIIMGKAYATSLPPITVEALGI 389
            P+N FH T+   S  +  +   T+L P +V  L +
Sbjct: 1534 PINEFHWTLVSNSVKMQRRFVVTNLQPSSVYQLKV 1568


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 421 STINCGTLGMMIPRASTVI 365
           +TIN GT+G +    ST++
Sbjct: 41  ATINIGTIGHVAHGKSTIV 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,954
Number of Sequences: 438
Number of extensions: 3078
Number of successful extensions: 34
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)