Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1001
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25410.1 68415.m03043 hypothetical protein                          29   3.3  
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    28   4.4  
At1g63500.1 68414.m07180 protein kinase-related low similarity t...    27   7.7  

>At2g25410.1 68415.m03043 hypothetical protein
          Length = 377

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -3

Query: 530 VISLPNLFGAWPSWCAIHYAYYWFYICFAVHNEF-DGVNNQLWHFRYDDSKSFDCDRRQA 354
           V+   NL G+ PS C I       +  F  +  + DG N++    ++D     DC+RR  
Sbjct: 153 VVQFENL-GSMPSSCHIFKILPLPFSWFVAYTTYPDGQNSRDMWLKWDSPDCRDCERRTN 211

Query: 353 CCVSFAHDNSRDHVNC 306
               F  +N+   V C
Sbjct: 212 SRCGF-KNNTSHQVEC 226


>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein similar to SP|Q13144
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 676

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 318 VSAIIMGKAYATSLPPITVEALGIIIPKVPQLIVD 422
           + AI++  ++AT L P+T+E   +++P V   ++D
Sbjct: 25  LQAILLADSFATKLLPLTLERPNVLLPLVNIPMID 59


>At1g63500.1 68414.m07180 protein kinase-related low similarity to
           protein kinase [Arabidopsis thaliana]; contains Pfam
           profile: PF00069 Eukaryotic protein kinase domain
          Length = 422

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = -3

Query: 413 QLWHFRYDDSKSFDCDRRQACCVSFAHDNSRDHVNCLMKYIQRTVHVFQSMFNFNQVTSV 234
           Q+W  +  DS +F    ++   V+F H    + ++C  ++I+    V  +++    +  +
Sbjct: 308 QMWTNQMQDSLNF----KKKGDVAFRHKEFANAIDCYSQFIEGGTMVSPTVYARRSLCYL 363

Query: 233 MSNMPQ 216
           M+ MPQ
Sbjct: 364 MNEMPQ 369


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,595,046
Number of Sequences: 28952
Number of extensions: 240989
Number of successful extensions: 684
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)