Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0998
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   131   7e-32
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    30   0.22 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   1.6  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   2.8  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   3.7  
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    26   4.8  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.4  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   8.5  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    25   8.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   8.5  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  131 bits (317), Expect = 7e-32
 Identities = 59/85 (69%), Positives = 74/85 (87%)
 Frame = +1

Query: 256 SHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNL 435
           S ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G+ FRGLF+ID K  L
Sbjct: 76  SEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFRGLFLIDPKGVL 135

Query: 436 RQITINDLPVGRSVEETLRLVQAFR 510
           RQITINDLPVGRSV+E LRL+ AF+
Sbjct: 136 RQITINDLPVGRSVDEALRLLDAFQ 160



 Score =  102 bits (245), Expect = 3e-23
 Identities = 46/70 (65%), Positives = 56/70 (80%)
 Frame = +2

Query: 32  MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 211
           M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A 
Sbjct: 1   MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60

Query: 212 EFRKIGCEVL 241
           +F +   +V+
Sbjct: 61  KFAERNAQVI 70



 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +3

Query: 510 FTDKHGEVCPANWRPGAKTIKPDTK 584
           F ++HGEVCPANW  G+ TI  DTK
Sbjct: 161 FVEEHGEVCPANWHKGSDTI--DTK 183


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 501 LHQPQGLLHRPPHGQVVDGDL-PEVLLVVDDEESSEGDARLLVQ 373
           L Q Q L  +    ++ D DL PEV  ++ +EES  G++R L++
Sbjct: 115 LQQQQLLAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = -1

Query: 243  PSTSQPILRNSSAFSENAIISVGHTNVKSKG*KNSTTYFPL*SDREMSLNSPLTTAVALN 64
            P TS  +L +S+  + + +++   T + S    N  T  P+ S   ++ ++P+T++ ALN
Sbjct: 1247 PITSSSVLNSSTPITSSTVVN-SSTPITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 53  PAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 184
           P P F+  +  +G+F   S +  K K V L  YP   TF   TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 294 QAGRTRSHEHSSDKRQVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRP 458
           +A R+  H H +   +   H  R  S   G  H    +LH   QA+P A   ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 217 ELVRLLRERDNLRRAHEREVQRIEEQHNIFPLVVRQRNV 101
           E  +LLRE +N+++  +RE    EE++       R+R +
Sbjct: 166 ETQQLLRELENIKQERKREQMLQEEKNRALEQEKREREI 204


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 327 RNVHGTESALLARRVDPGEVREVRAVEAPSTSQPILRNSSAFSENAIIS 181
           RNV G+E      +  P E  +    +A S+S P   N  +++   I S
Sbjct: 403 RNVSGSERTKSLSKESPVEPEKPALPDATSSSTPTTENKESWTNQGIKS 451


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 8   SKVFSFNKMPLQMTKPAPQFKATAVVN 88
           S +FSFN      TKP+P   +T   N
Sbjct: 467 SSIFSFNAPSAASTKPSPAVSSTFSFN 493


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -1

Query: 444 DLPEVLLVVDDEESS---EGDARLLVQHSVVARDAVRLVAYQRNVHGTESALLARR 286
           ++PEV LVVDD   S     +A  L++     RD V+ VA  R +   +  L  RR
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVK-VANSRKLRAGKGKLRNRR 200


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 301 GGLGPMNIPLISDKS 345
           GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,169
Number of Sequences: 5004
Number of extensions: 37096
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)