Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0998
(600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0) 129 1e-30
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012) 116 2e-26
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 1e-24
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06) 33 0.13
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2) 31 0.94
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_34869| Best HMM Match : Phage_integrase (HMM E-Value=0.087) 28 5.0
SB_38812| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_35941| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 28 6.6
SB_11163| Best HMM Match : DUF1104 (HMM E-Value=1.7) 28 6.6
SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11) 28 6.6
SB_47817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_36630| Best HMM Match : DUF1312 (HMM E-Value=0.67) 28 6.6
SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11) 28 6.6
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 27 8.8
SB_52021| Best HMM Match : Entericidin (HMM E-Value=4.7) 27 8.8
SB_7258| Best HMM Match : rve (HMM E-Value=1.1e-14) 27 8.8
>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
Length = 265
Score = 129 bits (312), Expect = 1e-30
Identities = 58/85 (68%), Positives = 73/85 (85%)
Frame = +1
Query: 256 SHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNL 435
S ++HLAW N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+ RGLFIIDDK L
Sbjct: 125 SEYSHLAWTNVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGIL 184
Query: 436 RQITINDLPVGRSVEETLRLVQAFR 510
RQITINDLPVGRSV+ETLRL+QAF+
Sbjct: 185 RQITINDLPVGRSVDETLRLIQAFQ 209
Score = 109 bits (263), Expect = 1e-24
Identities = 52/81 (64%), Positives = 63/81 (77%), Gaps = 4/81 (4%)
Frame = +2
Query: 11 KVFSFNKMPLQMT---KPAPQFKATAV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCP 178
++ SF++ + T KPAP F TAV +GEF D+ LSDYKGKYVVLFFYPLDFTFVCP
Sbjct: 39 RMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCP 98
Query: 179 TEIIAFSEKADEFRKIGCEVL 241
TEIIAFS++ DEF+ I CEV+
Sbjct: 99 TEIIAFSDRVDEFKAINCEVI 119
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 510 FTDKHGEVCPANWRPGAKT 566
FTDKHGEVCPA WRPGA T
Sbjct: 210 FTDKHGEVCPAGWRPGADT 228
>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
Length = 704
Score = 116 bits (278), Expect = 2e-26
Identities = 53/76 (69%), Positives = 66/76 (86%)
Frame = +1
Query: 283 NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLP 462
N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+ RGLFIIDDK LRQITINDLP
Sbjct: 3 NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62
Query: 463 VGRSVEETLRLVQAFR 510
VGRSV+ETLRL+QAF+
Sbjct: 63 VGRSVDETLRLIQAFQ 78
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 510 FTDKHGEVCPANWRPGAKT 566
FTDKHGEVCPA WRPGA T
Sbjct: 79 FTDKHGEVCPAGWRPGADT 97
>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 109 bits (263), Expect = 1e-24
Identities = 47/68 (69%), Positives = 60/68 (88%)
Frame = +2
Query: 41 QMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR 220
Q++KPAP ++ TAVVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR
Sbjct: 55 QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114
Query: 221 KIGCEVLG 244
I EV+G
Sbjct: 115 AINTEVVG 122
Score = 64.9 bits (151), Expect = 5e-11
Identities = 31/36 (86%), Positives = 34/36 (94%)
Frame = +1
Query: 403 GLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFR 510
GLFIIDDK LRQIT+NDLPVGRSV+ETLRLVQAF+
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQ 170
>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +3
Query: 510 FTDKHGEVCPANWRPGAKTIKPD 578
+TDKHGEVCPA W+PG TI PD
Sbjct: 17 YTDKHGEVCPAGWKPGKDTIIPD 39
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 463 VGRSVEETLRLVQAFR 510
VGRSV+ETLRLVQAF+
Sbjct: 1 VGRSVDETLRLVQAFQ 16
>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
Length = 160
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Frame = +1
Query: 319 NIPLISDKSHRISRDYGVLD----EETGIPF--RGLFIIDDKQNLRQITINDLPVGRSVE 480
N P+I+D+ ++ G++D + G+P R +FII + L+ + GR+ +
Sbjct: 34 NYPIIADERRELAVKLGMVDPDEKDSKGLPLTCRAVFIIGPDKKLKLSILYPATTGRNFD 93
Query: 481 ETLRLVQAFRSRTSTARCA 537
E LR++ + + T+T + A
Sbjct: 94 EILRVIDSLQ-LTATKKVA 111
>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3306
Score = 31.5 bits (68), Expect = 0.54
Identities = 25/76 (32%), Positives = 33/76 (43%)
Frame = -1
Query: 474 RPPHGQVVDGDLPEVLLVVDDEESSEGDARLLVQHSVVARDAVRLVAYQRNVHGTESALL 295
R G D D L +++DE S D ++ V R R+ Q + G + ALL
Sbjct: 2823 RTHEGVCKDADARNDLPLIEDEVQSMTDQYEALRRDV-GRQLDRVAEVQEELAGYQEALL 2881
Query: 294 ARRVDPGEVREVRAVE 247
A EV EV AVE
Sbjct: 2882 AVEETMREVEEVVAVE 2897
>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
Length = 893
Score = 30.7 bits (66), Expect = 0.94
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = -1
Query: 462 GQVVDGDLPEVLLVVDD-EESSEGDARLLVQHSVVARDAVRLVAYQRNVHGTESALLARR 286
G++ D + L ++ + ++EG+A+ H+V R+ + + Y R + GT+S L
Sbjct: 336 GKLTDESMDSFLSELEKVDTTAEGEAQRYFDHAVTLRNTILFLRYNRTL-GTDST-LPIG 393
Query: 285 VDPGEVREVRAVEAPSTSQPILRNSSAFSENAIIS 181
+D + ++A + S+ + +N S A +S
Sbjct: 394 LDLLRCESLNGLDAAACSRVLQKNYSLLVSMAPLS 428
>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -1
Query: 438 PEVLLVVDDEESSEGDARLLVQHSVVARDAVRLVAYQRNVHGTESALLARRVDPGEVREV 259
P+VL+V D E +LL H V R + Y R + SA LA + D E+ +
Sbjct: 464 PKVLMVDDGTEFKGATTKLLTDHGVEIRGFFTVADYDRGLVAMASA-LAYKTD-SEISTL 521
Query: 258 RAV 250
R +
Sbjct: 522 RVL 524
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 217 ELVRLLRERDNLRRAHEREVQRIE 146
E++RL RERD RR E E +RI+
Sbjct: 1545 EVIRLQRERDEERRRREDEEKRIQ 1568
>SB_34869| Best HMM Match : Phage_integrase (HMM E-Value=0.087)
Length = 897
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -1
Query: 366 VVARDAVRLVAYQRNVHGTESALLARRVDPGEVREVRAVEAPSTSQPILRNSSAFSENAI 187
V+ R A ++ A+ RN TE R V E+R A S+ +PI +S EN +
Sbjct: 24 VIDRQAKQISAWYRNRPSTEFMEAIREVMKEEIRSFAQFPAASSEKPI-TSSPGRDENGV 82
>SB_38812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +1
Query: 118 LQGEICCAVLLSFGLHVRVPDGDYRVLGEGGRVPQDRLRGARRLHRSHFTH 270
L+ ++ L +H P+ D V +GGR+P+ +L ++ ++ H
Sbjct: 20 LERKVTVIRLAESKIHNHKPEHDIDVHSQGGRLPKTKLHASKEQMDDYYRH 70
>SB_35941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/47 (21%), Positives = 27/47 (57%)
Frame = -3
Query: 193 RDNLRRAHEREVQRIEEQHNIFPLVVRQRNVLELSVDDGRGLELGSG 53
RDN+ + ++ ++ ++ H++ L + +R + L+ + G+ G+G
Sbjct: 297 RDNILKQIPKDPRKTKQLHSVLHLAIGERTEISLNTRNDDGMTNGAG 343
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -3
Query: 220 AELVRLLRERDNLRRAHEREVQRIEEQHNIFPLVVRQRN 104
A+L R+ +ER+ L++ +E + EE+ I+ + ++N
Sbjct: 1194 AQLARVKKERNKLKQKYEELTEEDEEEDAIYEETIEKQN 1232
>SB_11163| Best HMM Match : DUF1104 (HMM E-Value=1.7)
Length = 282
Score = 27.9 bits (59), Expect = 6.6
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Frame = -1
Query: 501 LHQPQGL---LHRPPHGQVVDGDLPEVLLVVDDEESSEGDARLLVQHSVVARDAVRLVAY 331
L+ P+GL LH P G+ P+ + VVDDE SEG V +V D +
Sbjct: 24 LNVPEGLKSALHIPGIGERKGQTDPDEIPVVDDEFLSEGKRVDFVLVTVFDSDGDKAKEN 83
Query: 330 QRNVHG-----TESALLARRVDPGEVREVRAVEAPSTSQPILRNSSAFSENAI--ISVGH 172
+R E LL +RV+P ++ A A S + + A+ + ++ +VG
Sbjct: 84 ERKRRYFERSLQEQGLLIQRVEPTIKKQAWAGYATKVSSTLYK---AYKDRSLKTAAVGL 140
Query: 171 TNV 163
T+V
Sbjct: 141 TDV 143
>SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)
Length = 334
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 337 DKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI--TIND 456
D ++ Y V+D+ET I GL I +K+N +++ T ND
Sbjct: 275 DTIREVNCRYNVVDKETRIKVTGLLTIKEKKNGKELYRTRND 316
>SB_47817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/101 (22%), Positives = 43/101 (42%)
Frame = -1
Query: 438 PEVLLVVDDEESSEGDARLLVQHSVVARDAVRLVAYQRNVHGTESALLARRVDPGEVREV 259
P+VL+V+D E +LL H V +L +++ TE+ + P + ++
Sbjct: 434 PKVLMVIDGTEFKGATTKLLTDHGVEGTTGAKL----SDMNATETRMTG--FAPKDAIKL 487
Query: 258 RAVEAPSTSQPILRNSSAFSENAIISVGHTNVKSKG*KNST 136
R V +P L I+V +++ KG + +T
Sbjct: 488 RRVPL-KAEKPPLEVPLEVGTEVYIAVNEEDLQDKGRRRAT 527
>SB_36630| Best HMM Match : DUF1312 (HMM E-Value=0.67)
Length = 241
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +1
Query: 118 LQGEICCAVLLSFGLHVRVPDGDYRVLGEGGRVPQDRLRGARRLHRSHFTH 270
L+ ++ L +H P+ D V +GGR+P+ +L ++ ++ H
Sbjct: 167 LERKVTVIRLAESKIHNHKPEHDIDVHSQGGRLPKTKLHASKEQMDDYYRH 217
>SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)
Length = 1123
Score = 27.9 bits (59), Expect = 6.6
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Frame = -1
Query: 501 LHQPQGL---LHRPPHGQVVDGDLPEVLLVVDDEESSEGDARLLVQHSVVARDAVRLVAY 331
L+ P+GL LH P G+ P+ + VVDDE SEG V +V D +
Sbjct: 24 LNVPEGLKSALHIPGIGERKGQTDPDEIPVVDDEFLSEGKRVDFVLVTVFDSDGDKAKEN 83
Query: 330 QRNVHG-----TESALLARRVDPGEVREVRAVEAPSTSQPILRNSSAFSENAI--ISVGH 172
+R E LL +RV+P ++ A A S + + A+ + ++ +VG
Sbjct: 84 ERKRRYFERSLQEQGLLIQRVEPTIKKQAWAGYATKVSSTLYK---AYKDRSLKTAAVGL 140
Query: 171 TNV 163
T+V
Sbjct: 141 TDV 143
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 223 LAELVRLLRERDNLRRAHEREVQRIEEQHN 134
LAEL RL + + + HERE + ++ HN
Sbjct: 1380 LAELSRLREDFNKVNAEHEREKKELKSLHN 1409
>SB_52021| Best HMM Match : Entericidin (HMM E-Value=4.7)
Length = 185
Score = 27.5 bits (58), Expect = 8.8
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = -1
Query: 465 HGQVVDGDLPEVLLVVDDEESSEGDARLLVQHSVVARDAVRLVAYQRNVHGTESALL--A 292
HGQ D DL + V+ + S + D R V S VA +R A Q G + L+
Sbjct: 52 HGQDNDSDLYRIFHVLYERLSDKADVRRDVWRS-VALVKIRGSAEQNGWDGPQEVLILNV 110
Query: 291 RRVDPGEVREVRAVEAPSTSQPILRNSSAFSENAIISVGHTNVKS 157
RR + + + P TS+ I + ++ +V H +VK+
Sbjct: 111 RRTEQ-DTHALSEDAFPVTSEGIGKRKGSYRRRH--AVCHASVKA 152
>SB_7258| Best HMM Match : rve (HMM E-Value=1.1e-14)
Length = 425
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 438 PEVLLVVDDEESSEGDARLLVQHSVVARDA 349
P+VL+V D E + +LL H VV R A
Sbjct: 242 PKVLMVDDCTEFKDATTKLLTDHGVVVRRA 271
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,179,478
Number of Sequences: 59808
Number of extensions: 331097
Number of successful extensions: 1356
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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