Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0998
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   143   1e-34
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   120   6e-28
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    39   0.002
Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical p...    29   2.5  
AF003135-7|AAK18991.1|  254|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF003135-6|AAK18988.2|  288|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein...    29   3.3  
Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein...    29   3.3  
Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AL132948-39|CAI79178.1|  380|Caenorhabditis elegans Hypothetical...    28   5.9  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  143 bits (346), Expect = 1e-34
 Identities = 66/85 (77%), Positives = 75/85 (88%)
 Frame = +1

Query: 256 SHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNL 435
           S F+HLAWIN PRK GGLG MNIP+++D +H+ISRDYGVL E+ GI FRGLFIID  QNL
Sbjct: 77  SVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFRGLFIIDPSQNL 136

Query: 436 RQITINDLPVGRSVEETLRLVQAFR 510
           RQITINDLPVGRSV+ETLRLVQAF+
Sbjct: 137 RQITINDLPVGRSVDETLRLVQAFQ 161



 Score =  113 bits (271), Expect = 1e-25
 Identities = 51/64 (79%), Positives = 57/64 (89%)
 Frame = +2

Query: 50  KPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIG 229
           KPAPQFK  AVV+GEF D+SLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS++A+EF+ I 
Sbjct: 8   KPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAIN 67

Query: 230 CEVL 241
             VL
Sbjct: 68  TVVL 71



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = +3

Query: 510 FTDKHGEVCPANWRPGAKTIKPDTK 584
           F +KHGEVCPA W PG+ TIKP  K
Sbjct: 162 FVEKHGEVCPAGWTPGSDTIKPGVK 186


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  120 bits (290), Expect = 6e-28
 Identities = 51/85 (60%), Positives = 71/85 (83%)
 Frame = +1

Query: 256 SHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNL 435
           SHF+HLAW+NTPRK GGLG M+IPL++D + +I+  +GVLD+E+G+ +RGLF+ID    +
Sbjct: 106 SHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGLSYRGLFLIDPSGTV 165

Query: 436 RQITINDLPVGRSVEETLRLVQAFR 510
           R  T NDLPVGRSV+ETLR+++AF+
Sbjct: 166 RHTTCNDLPVGRSVDETLRVLKAFQ 190



 Score =  100 bits (239), Expect = 9e-22
 Identities = 44/69 (63%), Positives = 55/69 (79%)
 Frame = +2

Query: 35  PLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADE 214
           PL      P FK TAVV+G+FK IS  DYKGK++V+FFYPLDFTFVCPTEIIA+ ++A+E
Sbjct: 32  PLGPKNTVPAFKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANE 91

Query: 215 FRKIGCEVL 241
           FR +G EV+
Sbjct: 92  FRSLGAEVV 100



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +3

Query: 510 FTDKHGEVCPANWRPGAKTIKP 575
           F+DKHGEVCPA+W   + TIKP
Sbjct: 191 FSDKHGEVCPADWHEDSPTIKP 212


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
 Frame = +2

Query: 98  KDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 241
           K+ +L +Y G+ +++LF +P DFT VC TE+    + A EFRK   ++L
Sbjct: 18  KNQTLHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQIL 66


>Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical
           protein F26E4.12 protein.
          Length = 163

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 80  VVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 241
           V N    D+SLSDYKGK V++         +         E  D ++K G EVL
Sbjct: 9   VKNANGDDVSLSDYKGK-VLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVL 61


>AF003135-7|AAK18991.1|  254|Caenorhabditis elegans Hypothetical
           protein W03F11.5b protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -1

Query: 504 GLHQPQGLLHRPPHGQVVDGDLPEVLLVVDDEESSEGDARLLVQHSVVARDAVRLVAYQR 325
           G+  P  L  RP + Q+ DG+  + + +VDD +    +  + V+ S +  D+ R     R
Sbjct: 83  GIQMPFSLTGRPMNLQI-DGESHDAVSLVDDPKKRNNEKSMEVRRSDMTPDSRRAFLRAR 141

Query: 324 NVHGTESA 301
            V   +SA
Sbjct: 142 QVCLEQSA 149


>AF003135-6|AAK18988.2|  288|Caenorhabditis elegans Hypothetical
           protein W03F11.5a protein.
          Length = 288

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -1

Query: 504 GLHQPQGLLHRPPHGQVVDGDLPEVLLVVDDEESSEGDARLLVQHSVVARDAVRLVAYQR 325
           G+  P  L  RP + Q+ DG+  + + +VDD +    +  + V+ S +  D+ R     R
Sbjct: 117 GIQMPFSLTGRPMNLQI-DGESHDAVSLVDDPKKRNNEKSMEVRRSDMTPDSRRAFLRAR 175

Query: 324 NVHGTESA 301
            V   +SA
Sbjct: 176 QVCLEQSA 183


>Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK849.2c protein.
          Length = 390

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 462 GQVVDGDLPEVLLVVDDEESSEGDARLLVQHS 367
           GQV  GDL   L+ V  +E S+ D  + ++HS
Sbjct: 331 GQVQQGDLDLELVFVCPDEDSDDDGTVTIEHS 362


>Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK849.2b protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 462 GQVVDGDLPEVLLVVDDEESSEGDARLLVQHS 367
           GQV  GDL   L+ V  +E S+ D  + ++HS
Sbjct: 353 GQVQQGDLDLELVFVCPDEDSDDDGTVTIEHS 384


>Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical
           protein ZK849.2a protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 462 GQVVDGDLPEVLLVVDDEESSEGDARLLVQHS 367
           GQV  GDL   L+ V  +E S+ D  + ++HS
Sbjct: 355 GQVQQGDLDLELVFVCPDEDSDDDGTVTIEHS 386


>Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical
           protein M106.5 protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +1

Query: 238 ARRLH-RSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFI 414
           AR+ H +   T + W+ T +   G+  MN+     + H +  D  + D+ T +   G  I
Sbjct: 161 ARQAHYKLTSTIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMI 216

Query: 415 IDDKQNLRQITINDLPVGRS 474
            D +  +R +TIN++  G++
Sbjct: 217 EDQESKMR-LTINEIYFGKT 235


>Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +1

Query: 238 ARRLH-RSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFI 414
           AR+ H +   T + W+ T +   G+  MN+     + H +  D  + D+ T +   G  I
Sbjct: 161 ARQAHYKLTSTIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMI 216

Query: 415 IDDKQNLRQITINDLPVGRS 474
            D +  +R +TIN++  G++
Sbjct: 217 EDQESKMR-LTINEIYFGKT 235


>Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +1

Query: 238 ARRLH-RSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFI 414
           AR+ H +   T + W+ T +   G+  MN+     + H +  D  + D+ T +   G  I
Sbjct: 161 ARQAHYKLTSTIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMI 216

Query: 415 IDDKQNLRQITINDLPVGRS 474
            D +  +R +TIN++  G++
Sbjct: 217 EDQESKMR-LTINEIYFGKT 235


>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 315 HEHSSDKRQVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEP 434
           HE  S K++ +  L R      G GH +  T H R   +P
Sbjct: 625 HEMWSKKQKKSARLGRQAEGSSGSGHSIRATSHPRAPTQP 664


>AL132948-39|CAI79178.1|  380|Caenorhabditis elegans Hypothetical
           protein Y39B6A.12b protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/76 (23%), Positives = 35/76 (46%)
 Frame = -1

Query: 468 PHGQVVDGDLPEVLLVVDDEESSEGDARLLVQHSVVARDAVRLVAYQRNVHGTESALLAR 289
           P G + D D P+ +LVVD +  ++ +   ++++    ++  +    +         LL  
Sbjct: 150 PRGGLPDHDSPQHMLVVDPQSRADSEIDAVIRNLQQFQETEQNGLLEPEPDQALKKLLG- 208

Query: 288 RVDPGEVREVRAVEAP 241
            +D G   EV A+ AP
Sbjct: 209 -IDDGRCEEVIAIAAP 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,572,244
Number of Sequences: 27780
Number of extensions: 228911
Number of successful extensions: 1147
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)