Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0997
         (540 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   0.74 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   0.74 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   4.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   4.0  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.0  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    21   6.9  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   6.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.2  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 375 GPPLERESPENVVSLPGLQQISAQGVLWQLT 283
           GP +    PE + S   + +I A G +W  T
Sbjct: 515 GPQITELEPETIESQDAITRIYACGTMWHET 545


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 375 GPPLERESPENVVSLPGLQQISAQGVLWQLT 283
           GP +    PE + S   + +I A G +W  T
Sbjct: 515 GPQITELEPETIESQDAITRIYACGTMWHET 545


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -1

Query: 375 GPPLERESPENVVSLPGLQQISAQGVLWQLT 283
           GP +    PE + S   + +I A   +W  T
Sbjct: 282 GPQITELEPETIESQDAITRIYAIATMWHET 312


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 467 VG*RQGFPSHH 435
           VG RQG P HH
Sbjct: 54  VGLRQGIPPHH 64


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +1

Query: 103  VMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPLLH 225
            +++++ S V+    T A   AC   + + N     S  L+H
Sbjct: 1358 IIIIVMSSVTYGIDTVAVCDACYSTIEEKNLQVNESGKLIH 1398


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 478 CSTSPFRQLAYSEE 519
           CS SP R+  Y+E+
Sbjct: 62  CSNSPLRKARYTEK 75


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 208 SPPLLHHHHRRAERSSGDSVEVVI 279
           +P  L+H   +AE S  DSV+ ++
Sbjct: 264 NPQSLNHQEVKAECSDLDSVDNIV 287


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 226 HHHRRAERSSGDSVEV 273
           HH+ R ERS  +S  +
Sbjct: 798 HHYGRRERSGSESSSI 813



 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -3

Query: 376  RAPPRARKSRECRLPAGPAANIRARCP 296
            R P        CR  A PA++ R+  P
Sbjct: 920  RQPAETHAGSPCRNSASPASSDRSGTP 946


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,026
Number of Sequences: 336
Number of extensions: 2269
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)